Hb_002025_230

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2025: 173002-178270
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10950g
description hypothetical protein
nr
ID XP_011014313.1
description PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
swissprot
ID Q9ZUL3
description Protein indeterminate-domain 5, chloroplastic OS=Arabidopsis thaliana GN=IDD5 PE=1 SV=1
trembl
ID U5G1I0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s10950g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20586: 173063-178827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_230 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
2 Hb_001195_110 0.1100673263 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
3 Hb_000138_190 0.1128376243 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
4 Hb_007786_010 0.1270061852 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
5 Hb_000062_230 0.1345503211 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
6 Hb_001846_060 0.1369641527 - - hypothetical protein RCOM_0992860 [Ricinus communis]
7 Hb_002377_040 0.137331973 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000742_250 0.1375152316 - - Tubulin beta-6 chain [Gossypium arboreum]
9 Hb_001673_120 0.141999864 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
10 Hb_000088_180 0.1423891373 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
11 Hb_002388_060 0.1427861627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005754_020 0.1432067344 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
13 Hb_000365_350 0.1438445417 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
14 Hb_000028_470 0.1449458239 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
15 Hb_000416_100 0.1456684993 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
16 Hb_012977_010 0.146240481 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
17 Hb_000085_340 0.1487593085 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
18 Hb_000005_050 0.1503200824 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
19 Hb_000300_540 0.150880275 - - PREDICTED: syntaxin-132 [Jatropha curcas]
20 Hb_000544_040 0.151552935 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_002025_230 Hb_002025_230 Hb_001195_110 Hb_001195_110 Hb_002025_230--Hb_001195_110 Hb_000138_190 Hb_000138_190 Hb_002025_230--Hb_000138_190 Hb_007786_010 Hb_007786_010 Hb_002025_230--Hb_007786_010 Hb_000062_230 Hb_000062_230 Hb_002025_230--Hb_000062_230 Hb_001846_060 Hb_001846_060 Hb_002025_230--Hb_001846_060 Hb_002377_040 Hb_002377_040 Hb_002025_230--Hb_002377_040 Hb_012807_120 Hb_012807_120 Hb_001195_110--Hb_012807_120 Hb_000365_350 Hb_000365_350 Hb_001195_110--Hb_000365_350 Hb_011316_030 Hb_011316_030 Hb_001195_110--Hb_011316_030 Hb_001140_080 Hb_001140_080 Hb_001195_110--Hb_001140_080 Hb_000138_010 Hb_000138_010 Hb_001195_110--Hb_000138_010 Hb_007741_170 Hb_007741_170 Hb_000138_190--Hb_007741_170 Hb_005298_060 Hb_005298_060 Hb_000138_190--Hb_005298_060 Hb_031042_040 Hb_031042_040 Hb_000138_190--Hb_031042_040 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_002044_090 Hb_002044_090 Hb_000062_230--Hb_002044_090 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_000742_250 Hb_000742_250 Hb_001846_060--Hb_000742_250 Hb_002400_270 Hb_002400_270 Hb_001846_060--Hb_002400_270 Hb_000369_060 Hb_000369_060 Hb_001846_060--Hb_000369_060 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_001846_060--Hb_007786_010 Hb_011316_110 Hb_011316_110 Hb_001846_060--Hb_011316_110 Hb_002377_040--Hb_005754_020 Hb_002377_040--Hb_002044_090 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.49 7.65664 11.8833 5.3016 70.0268 76.4968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1663 19.4477 46.399 5.00689 15.5244

CAGE analysis