Hb_002025_310

Information

Type -
Description -
Location Contig2025: 243075-244015
Sequence    

Annotation

kegg
ID rcu:RCOM_0775930
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002521887.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9M1K9
description Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis thaliana GN=TA1 PE=2 SV=1
trembl
ID B9S7B8
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0775930 PE=3 SV=1
Gene Ontology
ID GO:0004316
description short-chain dehydrogenase reductase 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_310 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001946_270 0.1970457736 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
3 Hb_055384_010 0.1997155956 - - -
4 Hb_001102_180 0.2187240252 - - eukaryotic translation initiation factor, putative [Ricinus communis]
5 Hb_002205_120 0.2213944695 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Jatropha curcas]
6 Hb_028872_060 0.2227480968 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
7 Hb_003312_010 0.2273305665 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
8 Hb_008103_120 0.227387958 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
9 Hb_143629_040 0.2279237644 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000057_200 0.2283698309 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
11 Hb_000230_520 0.2340920839 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
12 Hb_112399_010 0.2345281226 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000009_620 0.2355670201 - - zinc finger protein, putative [Ricinus communis]
14 Hb_003462_030 0.2371063271 - - hypothetical protein UMN_5210_01, partial [Pinus radiata]
15 Hb_002603_080 0.238635004 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
16 Hb_146868_010 0.2388980174 - - -
17 Hb_012180_020 0.2389684367 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
18 Hb_000051_110 0.2400473067 - - conserved hypothetical protein [Ricinus communis]
19 Hb_155123_010 0.2404379076 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_039946_020 0.2406834786 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002025_310 Hb_002025_310 Hb_001946_270 Hb_001946_270 Hb_002025_310--Hb_001946_270 Hb_055384_010 Hb_055384_010 Hb_002025_310--Hb_055384_010 Hb_001102_180 Hb_001102_180 Hb_002025_310--Hb_001102_180 Hb_002205_120 Hb_002205_120 Hb_002025_310--Hb_002205_120 Hb_028872_060 Hb_028872_060 Hb_002025_310--Hb_028872_060 Hb_003312_010 Hb_003312_010 Hb_002025_310--Hb_003312_010 Hb_012180_020 Hb_012180_020 Hb_001946_270--Hb_012180_020 Hb_000206_250 Hb_000206_250 Hb_001946_270--Hb_000206_250 Hb_000230_520 Hb_000230_520 Hb_001946_270--Hb_000230_520 Hb_001894_150 Hb_001894_150 Hb_001946_270--Hb_001894_150 Hb_002028_150 Hb_002028_150 Hb_001946_270--Hb_002028_150 Hb_002900_190 Hb_002900_190 Hb_001946_270--Hb_002900_190 Hb_112399_010 Hb_112399_010 Hb_055384_010--Hb_112399_010 Hb_002435_110 Hb_002435_110 Hb_055384_010--Hb_002435_110 Hb_008103_120 Hb_008103_120 Hb_055384_010--Hb_008103_120 Hb_120155_010 Hb_120155_010 Hb_055384_010--Hb_120155_010 Hb_003073_210 Hb_003073_210 Hb_055384_010--Hb_003073_210 Hb_000200_340 Hb_000200_340 Hb_001102_180--Hb_000200_340 Hb_001633_170 Hb_001633_170 Hb_001102_180--Hb_001633_170 Hb_001155_030 Hb_001155_030 Hb_001102_180--Hb_001155_030 Hb_003615_010 Hb_003615_010 Hb_001102_180--Hb_003615_010 Hb_061090_010 Hb_061090_010 Hb_001102_180--Hb_061090_010 Hb_000057_200 Hb_000057_200 Hb_001102_180--Hb_000057_200 Hb_007416_310 Hb_007416_310 Hb_002205_120--Hb_007416_310 Hb_000236_320 Hb_000236_320 Hb_002205_120--Hb_000236_320 Hb_171900_100 Hb_171900_100 Hb_002205_120--Hb_171900_100 Hb_000696_300 Hb_000696_300 Hb_002205_120--Hb_000696_300 Hb_023001_020 Hb_023001_020 Hb_002205_120--Hb_023001_020 Hb_000563_210 Hb_000563_210 Hb_002205_120--Hb_000563_210 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004242_190 Hb_004242_190 Hb_028872_060--Hb_004242_190 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_012052_060 Hb_012052_060 Hb_003312_010--Hb_012052_060 Hb_000877_060 Hb_000877_060 Hb_003312_010--Hb_000877_060 Hb_003159_080 Hb_003159_080 Hb_003312_010--Hb_003159_080 Hb_005625_040 Hb_005625_040 Hb_003312_010--Hb_005625_040 Hb_000442_100 Hb_000442_100 Hb_003312_010--Hb_000442_100 Hb_003312_010--Hb_112399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0540826 0.049877 0.0645725 0 0.0814424 0.13521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124256 0.048855 0.088862 0.138136 0

CAGE analysis