Hb_002025_370

Information

Type -
Description -
Location Contig2025: 306074-306610
Sequence    

Annotation

kegg
ID rcu:RCOM_1045980
description monooxygenase, putative
nr
ID XP_002514067.1
description monooxygenase, putative [Ricinus communis]
swissprot
ID Q9LF64
description RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1
trembl
ID B9RK23
description Monooxygenase, putative OS=Ricinus communis GN=RCOM_1045980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_370 0.0 - - monooxygenase, putative [Ricinus communis]
2 Hb_039650_010 0.1004562664 - - cellulose synthase-like protein [Populus tomentosa]
3 Hb_000111_130 0.1031170242 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_004940_090 0.1039121136 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_001365_040 0.1069405647 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
6 Hb_001274_040 0.1124254367 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
7 Hb_008707_020 0.1131337633 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000284_060 0.1172926482 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
9 Hb_067034_010 0.1245085331 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
10 Hb_006353_010 0.1258547156 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
11 Hb_000035_360 0.1272789921 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
12 Hb_000003_620 0.1279660043 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
13 Hb_001363_030 0.1302762296 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
14 Hb_001376_020 0.1307382025 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
15 Hb_005000_230 0.1312245084 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
16 Hb_001850_010 0.133740566 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
17 Hb_004652_050 0.1340188026 - - hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
18 Hb_011924_030 0.1365483912 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000233_060 0.1443773042 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
20 Hb_002648_020 0.1453870715 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]

Gene co-expression network

sample Hb_002025_370 Hb_002025_370 Hb_039650_010 Hb_039650_010 Hb_002025_370--Hb_039650_010 Hb_000111_130 Hb_000111_130 Hb_002025_370--Hb_000111_130 Hb_004940_090 Hb_004940_090 Hb_002025_370--Hb_004940_090 Hb_001365_040 Hb_001365_040 Hb_002025_370--Hb_001365_040 Hb_001274_040 Hb_001274_040 Hb_002025_370--Hb_001274_040 Hb_008707_020 Hb_008707_020 Hb_002025_370--Hb_008707_020 Hb_005000_230 Hb_005000_230 Hb_039650_010--Hb_005000_230 Hb_039650_010--Hb_008707_020 Hb_011924_030 Hb_011924_030 Hb_039650_010--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_039650_010--Hb_000284_060 Hb_005081_060 Hb_005081_060 Hb_039650_010--Hb_005081_060 Hb_000111_130--Hb_001274_040 Hb_002890_060 Hb_002890_060 Hb_000111_130--Hb_002890_060 Hb_000003_620 Hb_000003_620 Hb_000111_130--Hb_000003_620 Hb_000111_130--Hb_001365_040 Hb_009778_030 Hb_009778_030 Hb_000111_130--Hb_009778_030 Hb_000146_110 Hb_000146_110 Hb_000111_130--Hb_000146_110 Hb_001850_010 Hb_001850_010 Hb_004940_090--Hb_001850_010 Hb_004940_090--Hb_039650_010 Hb_006353_010 Hb_006353_010 Hb_004940_090--Hb_006353_010 Hb_000871_020 Hb_000871_020 Hb_004940_090--Hb_000871_020 Hb_004940_090--Hb_000284_060 Hb_001363_030 Hb_001363_030 Hb_001365_040--Hb_001363_030 Hb_001013_010 Hb_001013_010 Hb_001365_040--Hb_001013_010 Hb_001365_040--Hb_000003_620 Hb_001365_040--Hb_009778_030 Hb_001274_040--Hb_002890_060 Hb_000039_100 Hb_000039_100 Hb_001274_040--Hb_000039_100 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_001274_040--Hb_008707_020 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_000035_360 Hb_000035_360 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.4287 0.243494 0.232152 0 0.0458964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.13663 0.713608

CAGE analysis