Hb_002025_380

Information

Type -
Description -
Location Contig2025: 311986-313848
Sequence    

Annotation

kegg
ID tcc:TCM_011176
description hypothetical protein
nr
ID XP_007045400.1
description Uncharacterized protein TCM_011176 [Theobroma cacao]
swissprot
ID Q6NLW5
description Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
trembl
ID A0A061EA44
description Uncharacterized protein OS=Theobroma cacao GN=TCM_011176 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20609: 312784-313933
cDNA
(Sanger)
(ID:Location)		 003_P13.ab1: 313737-313933

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_380 0.0 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
2 Hb_006277_030 0.0655903748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003189_010 0.0773942588 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
4 Hb_002818_170 0.0825849023 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
5 Hb_002097_180 0.0987514944 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
6 Hb_005144_080 0.1011225096 - - Serine carboxypeptidase, putative [Ricinus communis]
7 Hb_006501_100 0.1024816533 - - malic enzyme, putative [Ricinus communis]
8 Hb_009767_050 0.1161088844 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_004282_010 0.1166564474 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
10 Hb_002072_040 0.1170100804 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
11 Hb_001568_010 0.1323755624 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005731_070 0.1331233275 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000014_080 0.1360813991 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
14 Hb_001040_200 0.140804004 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
15 Hb_000956_070 0.1428968676 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_003226_050 0.1481773405 - - Pectinesterase-3 precursor, putative [Ricinus communis]
17 Hb_004984_020 0.1493623059 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
18 Hb_001047_170 0.1521590443 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
19 Hb_000749_160 0.1527680996 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_000364_130 0.1539440628 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002025_380 Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_002025_380--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002025_380--Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_002025_380--Hb_002818_170 Hb_002097_180 Hb_002097_180 Hb_002025_380--Hb_002097_180 Hb_005144_080 Hb_005144_080 Hb_002025_380--Hb_005144_080 Hb_006501_100 Hb_006501_100 Hb_002025_380--Hb_006501_100 Hb_006277_030--Hb_002818_170 Hb_006277_030--Hb_003189_010 Hb_006277_030--Hb_006501_100 Hb_004282_010 Hb_004282_010 Hb_006277_030--Hb_004282_010 Hb_006277_030--Hb_005144_080 Hb_003189_010--Hb_002818_170 Hb_003189_010--Hb_002097_180 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_002818_170--Hb_002097_180 Hb_002818_170--Hb_006501_100 Hb_002818_170--Hb_004282_010 Hb_002097_180--Hb_006501_100 Hb_002097_180--Hb_006277_030 Hb_009615_030 Hb_009615_030 Hb_002097_180--Hb_009615_030 Hb_005144_080--Hb_004282_010 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_011129_020 Hb_011129_020 Hb_005144_080--Hb_011129_020 Hb_006501_100--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_006501_100--Hb_000956_070 Hb_000014_080 Hb_000014_080 Hb_006501_100--Hb_000014_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11052 6.18692 12.6474 0.0446079 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.15729 12.3536 2.7087

CAGE analysis