Hb_002026_020

Information

Type -
Description -
Location Contig2026: 18726-22695
Sequence    

Annotation

kegg
ID pop:POPTR_0012s129501
description hypothetical protein
nr
ID XP_006377060.1
description hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G014
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s129501g PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_020 0.0 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
2 Hb_001328_050 0.1009417658 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
3 Hb_006829_070 0.1024965765 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
4 Hb_000030_020 0.1131513226 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
5 Hb_012762_060 0.1160173817 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
6 Hb_002900_150 0.1268364745 - - PREDICTED: syntaxin-81 [Jatropha curcas]
7 Hb_003680_030 0.1302078509 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
8 Hb_004631_170 0.1321044691 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012286_060 0.1328401998 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_000424_030 0.1339358617 - - conserved hypothetical protein [Ricinus communis]
11 Hb_018133_100 0.1350987356 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_186247_010 0.1357663117 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
13 Hb_000915_130 0.1385726756 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
14 Hb_008119_030 0.1401559442 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
15 Hb_002488_010 0.1405922336 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
16 Hb_002217_320 0.1427356117 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
17 Hb_006925_050 0.1427793512 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
18 Hb_004730_020 0.1455631811 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
19 Hb_000968_060 0.1457119802 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
20 Hb_118939_010 0.150528814 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002026_020 Hb_002026_020 Hb_001328_050 Hb_001328_050 Hb_002026_020--Hb_001328_050 Hb_006829_070 Hb_006829_070 Hb_002026_020--Hb_006829_070 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_012762_060 Hb_012762_060 Hb_002026_020--Hb_012762_060 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_003680_030 Hb_003680_030 Hb_002026_020--Hb_003680_030 Hb_001328_050--Hb_002900_150 Hb_000968_060 Hb_000968_060 Hb_001328_050--Hb_000968_060 Hb_000915_130 Hb_000915_130 Hb_001328_050--Hb_000915_130 Hb_018133_100 Hb_018133_100 Hb_001328_050--Hb_018133_100 Hb_003090_160 Hb_003090_160 Hb_001328_050--Hb_003090_160 Hb_006829_070--Hb_012762_060 Hb_006829_070--Hb_003680_030 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_002217_320 Hb_002217_320 Hb_006829_070--Hb_002217_320 Hb_006925_050 Hb_006925_050 Hb_006829_070--Hb_006925_050 Hb_012286_060 Hb_012286_060 Hb_000030_020--Hb_012286_060 Hb_000165_090 Hb_000165_090 Hb_000030_020--Hb_000165_090 Hb_005348_150 Hb_005348_150 Hb_000030_020--Hb_005348_150 Hb_000599_330 Hb_000599_330 Hb_000030_020--Hb_000599_330 Hb_005245_140 Hb_005245_140 Hb_000030_020--Hb_005245_140 Hb_012762_060--Hb_003680_030 Hb_012762_060--Hb_002217_320 Hb_002488_010 Hb_002488_010 Hb_012762_060--Hb_002488_010 Hb_000134_120 Hb_000134_120 Hb_012762_060--Hb_000134_120 Hb_002900_150--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002900_150--Hb_000866_070 Hb_002900_150--Hb_002488_010 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_004158_050 Hb_004158_050 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02286 7.73474 14.5973 21.349 2.88251 3.72224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18612 1.21157 0.961396 1.27026 6.01933

CAGE analysis