Hb_002026_090

Information

Type -
Description -
Location Contig2026: 80632-86777
Sequence    

Annotation

kegg
ID rcu:RCOM_1687380
description ubiquitin-conjugating enzyme h, putative (EC:6.3.2.19)
nr
ID XP_012086864.1
description PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
swissprot
ID P42749
description Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2
trembl
ID A0A067JNF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20568 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20630: 80665-86568 , PASA_asmbl_20632: 86366-86549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_090 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
2 Hb_004158_050 0.0531806188 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
3 Hb_001623_490 0.0805192589 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
4 Hb_000327_330 0.0859549953 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001160_110 0.0900302738 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
6 Hb_001663_130 0.0905832144 - - acyl-CoA thioesterase, putative [Ricinus communis]
7 Hb_003687_080 0.0953861825 - - PREDICTED: casein kinase I-like [Jatropha curcas]
8 Hb_000300_560 0.0972667029 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
9 Hb_012779_080 0.1014494115 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
10 Hb_001396_020 0.1015126373 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_000086_270 0.1020111629 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_021596_020 0.1030180477 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
13 Hb_016448_010 0.1031161106 - - Protein MYG1, putative [Ricinus communis]
14 Hb_004718_060 0.1045450975 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_001247_210 0.1058865215 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003925_060 0.1105728651 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
17 Hb_000320_190 0.1117420317 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
18 Hb_005665_090 0.1119684389 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
19 Hb_007594_080 0.1125024648 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
20 Hb_023091_010 0.1128481668 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]

Gene co-expression network

sample Hb_002026_090 Hb_002026_090 Hb_004158_050 Hb_004158_050 Hb_002026_090--Hb_004158_050 Hb_001623_490 Hb_001623_490 Hb_002026_090--Hb_001623_490 Hb_000327_330 Hb_000327_330 Hb_002026_090--Hb_000327_330 Hb_001160_110 Hb_001160_110 Hb_002026_090--Hb_001160_110 Hb_001663_130 Hb_001663_130 Hb_002026_090--Hb_001663_130 Hb_003687_080 Hb_003687_080 Hb_002026_090--Hb_003687_080 Hb_004158_050--Hb_000327_330 Hb_004158_050--Hb_001623_490 Hb_004158_050--Hb_003687_080 Hb_007594_080 Hb_007594_080 Hb_004158_050--Hb_007594_080 Hb_004158_050--Hb_001160_110 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_000327_330--Hb_003687_080 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_001160_110--Hb_003687_080 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001160_110--Hb_001663_130 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_003687_080--Hb_000318_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.33188 17.4717 44.7877 20.6825 7.06599 12.2298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07698 7.17188 4.23536 9.94064 22.1166

CAGE analysis