Hb_002026_100

Information

Type transcription factor
Description TF Family: ARID
Location Contig2026: 88441-93254
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12990g
description POPTRDRAFT_757535; hypothetical protein
nr
ID XP_012086862.1
description PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A067JN42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20567 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20634: 89096-89570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_100 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
2 Hb_012634_010 0.0668876093 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
3 Hb_000152_820 0.0764933376 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
4 Hb_000977_070 0.0832270959 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
5 Hb_010175_020 0.0862486172 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001736_040 0.087785784 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_000406_220 0.089147259 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
8 Hb_001516_100 0.0895019832 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_002039_010 0.0895682161 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_006400_040 0.0900630487 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
11 Hb_000032_290 0.0910007875 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
12 Hb_000317_020 0.092673959 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_000500_040 0.0937728952 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000661_050 0.0944616474 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
15 Hb_002890_340 0.0944646603 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
16 Hb_001584_160 0.0946355788 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
17 Hb_000155_190 0.0947495166 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015306_020 0.0947684097 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
19 Hb_181235_010 0.0957602649 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
20 Hb_002027_260 0.0957717429 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]

Gene co-expression network

sample Hb_002026_100 Hb_002026_100 Hb_012634_010 Hb_012634_010 Hb_002026_100--Hb_012634_010 Hb_000152_820 Hb_000152_820 Hb_002026_100--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_002026_100--Hb_000977_070 Hb_010175_020 Hb_010175_020 Hb_002026_100--Hb_010175_020 Hb_001736_040 Hb_001736_040 Hb_002026_100--Hb_001736_040 Hb_000406_220 Hb_000406_220 Hb_002026_100--Hb_000406_220 Hb_001790_020 Hb_001790_020 Hb_012634_010--Hb_001790_020 Hb_002027_260 Hb_002027_260 Hb_012634_010--Hb_002027_260 Hb_001571_040 Hb_001571_040 Hb_012634_010--Hb_001571_040 Hb_006400_040 Hb_006400_040 Hb_012634_010--Hb_006400_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020 Hb_000152_820--Hb_010175_020 Hb_000317_020 Hb_000317_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_000977_070--Hb_001736_040 Hb_001141_330 Hb_001141_330 Hb_000977_070--Hb_001141_330 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000977_070--Hb_000152_820 Hb_000977_070--Hb_000317_020 Hb_010175_020--Hb_007757_110 Hb_175338_030 Hb_175338_030 Hb_010175_020--Hb_175338_030 Hb_002307_100 Hb_002307_100 Hb_010175_020--Hb_002307_100 Hb_010175_020--Hb_000317_020 Hb_000413_180 Hb_000413_180 Hb_010175_020--Hb_000413_180 Hb_000661_050 Hb_000661_050 Hb_001736_040--Hb_000661_050 Hb_002477_030 Hb_002477_030 Hb_001736_040--Hb_002477_030 Hb_001736_040--Hb_000317_020 Hb_001736_040--Hb_000827_070 Hb_000554_020 Hb_000554_020 Hb_000406_220--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_000406_220--Hb_000032_290 Hb_181235_010 Hb_181235_010 Hb_000406_220--Hb_181235_010 Hb_001789_090 Hb_001789_090 Hb_000406_220--Hb_001789_090 Hb_011161_010 Hb_011161_010 Hb_000406_220--Hb_011161_010 Hb_002810_020 Hb_002810_020 Hb_000406_220--Hb_002810_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18395 3.45562 0.481159 1.67912 5.93668 5.93702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49311 4.82633 5.2532 2.97256 1.28197

CAGE analysis