Hb_002026_110

Information

Type -
Description -
Location Contig2026: 95143-97447
Sequence    

Annotation

kegg
ID rcu:RCOM_1687500
description protein binding protein, putative
nr
ID XP_002509832.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID B9RCE8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1687500 PE=4 SV=1
Gene Ontology
ID GO:0005739
description e3 ubiquitin-protein ligase at3g02290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20635: 95561-97442
cDNA
(Sanger)
(ID:Location)		 005_H07.ab1: 95776-97440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_110 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001141_330 0.0706987341 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
3 Hb_000340_510 0.0708660174 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
4 Hb_017168_010 0.0763241726 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000481_010 0.0796233619 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
6 Hb_002818_040 0.0873036803 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_029281_010 0.0888997735 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
8 Hb_000001_180 0.0895184917 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_004324_280 0.0911599624 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
10 Hb_004724_360 0.0950531291 - - OTU-like cysteine protease family protein [Populus trichocarpa]
11 Hb_005314_010 0.0951820566 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_000107_100 0.0972258797 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
13 Hb_000808_180 0.0974053572 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
14 Hb_001936_050 0.0980447229 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
15 Hb_001366_040 0.0985981264 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
16 Hb_000284_200 0.1013510165 - - -
17 Hb_002942_220 0.1016396825 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
18 Hb_002169_010 0.1016744353 - - PREDICTED: la-related protein 6B [Jatropha curcas]
19 Hb_002007_250 0.1020184234 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000977_070 0.1023751986 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_110 Hb_002026_110 Hb_001141_330 Hb_001141_330 Hb_002026_110--Hb_001141_330 Hb_000340_510 Hb_000340_510 Hb_002026_110--Hb_000340_510 Hb_017168_010 Hb_017168_010 Hb_002026_110--Hb_017168_010 Hb_000481_010 Hb_000481_010 Hb_002026_110--Hb_000481_010 Hb_002818_040 Hb_002818_040 Hb_002026_110--Hb_002818_040 Hb_029281_010 Hb_029281_010 Hb_002026_110--Hb_029281_010 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_001141_330--Hb_000340_510 Hb_000340_510--Hb_002818_040 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_000340_510--Hb_017168_010 Hb_017168_010--Hb_000107_100 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_000784_090 Hb_000784_090 Hb_000481_010--Hb_000784_090 Hb_002249_140 Hb_002249_140 Hb_000481_010--Hb_002249_140 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.8411 29.0744 7.54692 5.2829 64.6887 55.0838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9781 33.2753 37.8071 15.6886 13.1874

CAGE analysis