Hb_002026_150

Information

Type transcription factor
Description TF Family: SNF2
Location Contig2026: 124815-133654
Sequence    

Annotation

kegg
ID rcu:RCOM_1687530
description rad25/xp-B DNA repair helicase, putative
nr
ID XP_012086852.1
description PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
swissprot
ID Q38861
description DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
trembl
ID A0A067JNF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20563 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair helicase xpb1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20644: 124948-133600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_150 0.0 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
2 Hb_010142_020 0.0593171392 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001105_020 0.0619318948 - - expressed protein, putative [Ricinus communis]
4 Hb_002169_050 0.0641534322 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
5 Hb_000366_200 0.0659944549 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
6 Hb_000011_060 0.0660737831 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
7 Hb_000614_240 0.0699099769 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_003058_260 0.0710863983 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
9 Hb_012498_010 0.0723533212 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
10 Hb_001221_080 0.0726414059 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
11 Hb_000046_500 0.0760146292 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
12 Hb_010294_010 0.0766750035 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
13 Hb_000441_220 0.0778912269 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_011063_050 0.0780469848 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
15 Hb_009296_040 0.0781975258 - - hypothetical protein L484_007435 [Morus notabilis]
16 Hb_000189_550 0.0785975793 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
17 Hb_000352_300 0.0790478023 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
18 Hb_011016_050 0.079773979 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
19 Hb_000140_290 0.0800935082 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
20 Hb_005634_010 0.0802888303 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002026_150 Hb_002026_150 Hb_010142_020 Hb_010142_020 Hb_002026_150--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_002026_150--Hb_001105_020 Hb_002169_050 Hb_002169_050 Hb_002026_150--Hb_002169_050 Hb_000366_200 Hb_000366_200 Hb_002026_150--Hb_000366_200 Hb_000011_060 Hb_000011_060 Hb_002026_150--Hb_000011_060 Hb_000614_240 Hb_000614_240 Hb_002026_150--Hb_000614_240 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_001105_020--Hb_000614_240 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_001105_020--Hb_000011_060 Hb_000189_550 Hb_000189_550 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040 Hb_002909_140 Hb_002909_140 Hb_002169_050--Hb_002909_140 Hb_002169_050--Hb_000614_240 Hb_012498_010 Hb_012498_010 Hb_002169_050--Hb_012498_010 Hb_002169_050--Hb_000011_060 Hb_002169_050--Hb_010142_020 Hb_000031_110 Hb_000031_110 Hb_000366_200--Hb_000031_110 Hb_000352_300 Hb_000352_300 Hb_000366_200--Hb_000352_300 Hb_000366_200--Hb_002169_050 Hb_010174_040 Hb_010174_040 Hb_000366_200--Hb_010174_040 Hb_000366_200--Hb_002909_140 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4864 12.3515 14.477 21.7893 16.6177 13.2343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2474 11.6031 21.4548 24.645 17.9039

CAGE analysis