Hb_002026_160

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2026: 139846-141326
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13050g
description POPTRDRAFT_757541; hypothetical protein
nr
ID XP_012086850.1
description PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
swissprot
ID Q9SK53
description Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1
trembl
ID A0A067JN38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20562 PE=4 SV=1
Gene Ontology
ID GO:0008152
description zinc finger protein constans-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_160 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
2 Hb_001894_180 0.239987552 - - galactinol synthase [Manihot esculenta]
3 Hb_126711_010 0.2414392039 - - JAZ10 [Hevea brasiliensis]
4 Hb_002759_270 0.2485811335 - - Nectarin-1 precursor, putative [Ricinus communis]
5 Hb_001248_180 0.2536905551 - - -
6 Hb_153774_010 0.2607000548 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000959_180 0.2607251903 - - hypothetical protein JCGZ_09448 [Jatropha curcas]
8 Hb_002874_160 0.261027312 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005736_010 0.2633539628 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
10 Hb_116091_010 0.2643967441 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
11 Hb_009411_030 0.2679061812 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
12 Hb_000566_090 0.272086354 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008643_020 0.2723110687 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
14 Hb_081228_010 0.277314616 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
15 Hb_003544_040 0.2780510649 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
16 Hb_000062_200 0.2786199738 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_002320_050 0.2814204333 - - clathrin assembly family protein [Populus trichocarpa]
18 Hb_000028_500 0.2836179983 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000103_190 0.2855900247 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
20 Hb_003925_130 0.2864908448 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002026_160 Hb_002026_160 Hb_001894_180 Hb_001894_180 Hb_002026_160--Hb_001894_180 Hb_126711_010 Hb_126711_010 Hb_002026_160--Hb_126711_010 Hb_002759_270 Hb_002759_270 Hb_002026_160--Hb_002759_270 Hb_001248_180 Hb_001248_180 Hb_002026_160--Hb_001248_180 Hb_153774_010 Hb_153774_010 Hb_002026_160--Hb_153774_010 Hb_000959_180 Hb_000959_180 Hb_002026_160--Hb_000959_180 Hb_168319_020 Hb_168319_020 Hb_001894_180--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_001894_180--Hb_126711_010 Hb_010377_020 Hb_010377_020 Hb_001894_180--Hb_010377_020 Hb_001329_030 Hb_001329_030 Hb_001894_180--Hb_001329_030 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_126711_010--Hb_001329_030 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340 Hb_104362_020 Hb_104362_020 Hb_002759_270--Hb_104362_020 Hb_179367_010 Hb_179367_010 Hb_002759_270--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_002759_270--Hb_151027_010 Hb_002014_120 Hb_002014_120 Hb_002759_270--Hb_002014_120 Hb_000174_130 Hb_000174_130 Hb_002759_270--Hb_000174_130 Hb_004652_040 Hb_004652_040 Hb_002759_270--Hb_004652_040 Hb_081228_010 Hb_081228_010 Hb_001248_180--Hb_081228_010 Hb_009411_030 Hb_009411_030 Hb_001248_180--Hb_009411_030 Hb_000628_060 Hb_000628_060 Hb_001248_180--Hb_000628_060 Hb_008066_020 Hb_008066_020 Hb_001248_180--Hb_008066_020 Hb_004474_020 Hb_004474_020 Hb_001248_180--Hb_004474_020 Hb_010926_020 Hb_010926_020 Hb_001248_180--Hb_010926_020 Hb_001998_100 Hb_001998_100 Hb_153774_010--Hb_001998_100 Hb_009010_040 Hb_009010_040 Hb_153774_010--Hb_009010_040 Hb_009111_060 Hb_009111_060 Hb_153774_010--Hb_009111_060 Hb_153774_010--Hb_002759_270 Hb_005356_050 Hb_005356_050 Hb_153774_010--Hb_005356_050 Hb_002925_040 Hb_002925_040 Hb_153774_010--Hb_002925_040 Hb_000959_180--Hb_005356_050 Hb_108216_030 Hb_108216_030 Hb_000959_180--Hb_108216_030 Hb_000723_210 Hb_000723_210 Hb_000959_180--Hb_000723_210 Hb_000365_040 Hb_000365_040 Hb_000959_180--Hb_000365_040 Hb_000245_070 Hb_000245_070 Hb_000959_180--Hb_000245_070 Hb_001247_080 Hb_001247_080 Hb_000959_180--Hb_001247_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104062 0.0483994 0.394602 0 0.0365714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0690484 0.0150183 0

CAGE analysis