Hb_002026_210

Information

Type -
Description -
Location Contig2026: 189422-196377
Sequence    

Annotation

kegg
ID tcc:TCM_016247
description Kinase protein with tetratricopeptide repeat domain isoform 1
nr
ID XP_012086904.1
description PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID A0A067JNI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20593 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20656: 189698-195968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_210 0.0 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
2 Hb_028512_020 0.0560358035 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
3 Hb_011849_040 0.0578194643 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000009_500 0.058122553 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
5 Hb_000614_210 0.0621690021 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
6 Hb_000923_010 0.0624560616 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
7 Hb_000340_530 0.0635581533 - - hypothetical protein VITISV_016664 [Vitis vinifera]
8 Hb_004324_130 0.0649320519 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_003906_200 0.0664667606 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
10 Hb_004143_100 0.0678013578 - - conserved hypothetical protein [Ricinus communis]
11 Hb_079326_020 0.0687045354 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006520_040 0.0699806566 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
13 Hb_000130_410 0.07037367 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
14 Hb_013738_020 0.0704046282 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
15 Hb_000116_450 0.0712410162 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
16 Hb_002110_080 0.0715178796 - - FH interacting protein 1 [Theobroma cacao]
17 Hb_093458_040 0.0718292839 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
18 Hb_004109_230 0.0724023752 - - heat shock protein binding protein, putative [Ricinus communis]
19 Hb_000028_370 0.0736122192 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
20 Hb_002989_020 0.0750746451 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_210 Hb_002026_210 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_000260_330 Hb_000260_330 Hb_028512_020--Hb_000260_330 Hb_004109_230 Hb_004109_230 Hb_028512_020--Hb_004109_230 Hb_001860_030 Hb_001860_030 Hb_028512_020--Hb_001860_030 Hb_028512_020--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_028512_020--Hb_014361_070 Hb_011849_040--Hb_000009_500 Hb_079326_020 Hb_079326_020 Hb_011849_040--Hb_079326_020 Hb_000402_230 Hb_000402_230 Hb_011849_040--Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_011849_040--Hb_000614_210 Hb_000009_500--Hb_000402_230 Hb_000009_500--Hb_079326_020 Hb_000009_500--Hb_004109_230 Hb_000009_500--Hb_000614_210 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010 Hb_013399_020 Hb_013399_020 Hb_000923_010--Hb_013399_020 Hb_000029_300 Hb_000029_300 Hb_000923_010--Hb_000029_300 Hb_000083_120 Hb_000083_120 Hb_000923_010--Hb_000083_120 Hb_000923_010--Hb_000260_330 Hb_000923_010--Hb_000340_530 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38168 15.006 7.82817 14.1434 10.4716 12.9621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3847 10.8545 8.81332 12.1069 9.85431

CAGE analysis