Hb_002026_220

Information

Type -
Description -
Location Contig2026: 196999-204184
Sequence    

Annotation

kegg
ID rcu:RCOM_1686670
description Glutamate--cysteine ligase, chloroplast precursor, putative (EC:6.3.2.2)
nr
ID XP_002509800.1
description Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O22493
description Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1
trembl
ID B9RCB6
description Glutamate--cysteine ligase, chloroplast, putative OS=Ricinus communis GN=RCOM_1686670 PE=4 SV=1
Gene Ontology
ID GO:0009570
description glutamate--cysteine chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20658: 197026-204147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_220 0.0 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
2 Hb_000362_200 0.0783657602 - - exonuclease family protein [Populus trichocarpa]
3 Hb_005186_050 0.0871334969 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
4 Hb_000230_200 0.0953586267 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
5 Hb_004093_090 0.0963124463 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
6 Hb_002968_060 0.0979309912 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
7 Hb_028841_030 0.103457717 - - -
8 Hb_001305_010 0.1047884116 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
9 Hb_000008_470 0.1051938918 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
10 Hb_001512_060 0.1054698177 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
11 Hb_003363_110 0.1058678858 - - protein with unknown function [Ricinus communis]
12 Hb_000012_220 0.1087337865 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003069_010 0.1093633828 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
14 Hb_000141_040 0.109979722 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
15 Hb_004096_090 0.1100535299 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_002660_080 0.1106977869 - - 60S ribosomal protein L12A [Hevea brasiliensis]
17 Hb_009694_010 0.1107660952 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002685_040 0.1109216323 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
19 Hb_011970_030 0.1111495224 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
20 Hb_001104_180 0.1116203419 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_220 Hb_002026_220 Hb_000362_200 Hb_000362_200 Hb_002026_220--Hb_000362_200 Hb_005186_050 Hb_005186_050 Hb_002026_220--Hb_005186_050 Hb_000230_200 Hb_000230_200 Hb_002026_220--Hb_000230_200 Hb_004093_090 Hb_004093_090 Hb_002026_220--Hb_004093_090 Hb_002968_060 Hb_002968_060 Hb_002026_220--Hb_002968_060 Hb_028841_030 Hb_028841_030 Hb_002026_220--Hb_028841_030 Hb_001512_060 Hb_001512_060 Hb_000362_200--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_000362_200--Hb_005186_050 Hb_000362_200--Hb_004093_090 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_003607_150 Hb_003607_150 Hb_005186_050--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_005186_050--Hb_007154_020 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_002007_060 Hb_002007_060 Hb_002968_060--Hb_002007_060 Hb_002968_060--Hb_003001_120 Hb_002968_060--Hb_001269_680 Hb_010661_030 Hb_010661_030 Hb_002968_060--Hb_010661_030 Hb_000103_560 Hb_000103_560 Hb_002968_060--Hb_000103_560 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_028841_030--Hb_011381_060 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.1166 20.8919 40.0164 34.7201 40.5478 49.4036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4895 88.7807 40.7845 22.1479 21.9159

CAGE analysis