Hb_002027_030

Information

Type -
Description -
Location Contig2027: 16423-23564
Sequence    

Annotation

kegg
ID rcu:RCOM_0647920
description hypothetical protein
nr
ID XP_002524804.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647920 PE=4 SV=1
Gene Ontology
ID GO:0016706
description alpha-ketoglutarate-dependent dioxygenase abh5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20664: 16987-20975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_168319_010 0.1484429899 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
3 Hb_012340_060 0.1604197003 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000123_220 0.1705711485 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
5 Hb_025708_010 0.1743209476 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
6 Hb_005539_260 0.1784242962 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
7 Hb_001817_100 0.1801567655 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
8 Hb_128589_010 0.1815071382 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_001381_060 0.1839003474 - - monoxygenase, putative [Ricinus communis]
10 Hb_000913_080 0.1857339583 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
11 Hb_000645_200 0.1886800134 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
12 Hb_000057_080 0.1888045774 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
13 Hb_009193_100 0.188817276 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
14 Hb_000270_180 0.1895325164 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
15 Hb_007919_020 0.1899900642 - - electron transporter, putative [Ricinus communis]
16 Hb_007590_090 0.1927189869 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
17 Hb_000059_300 0.1935811803 - - caspase, putative [Ricinus communis]
18 Hb_000648_050 0.1937146999 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
19 Hb_001486_200 0.1947579622 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
20 Hb_000139_140 0.2007286351 - - Acyl-CoA synthetase [Ricinus communis]

Gene co-expression network

sample Hb_002027_030 Hb_002027_030 Hb_168319_010 Hb_168319_010 Hb_002027_030--Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_002027_030--Hb_012340_060 Hb_000123_220 Hb_000123_220 Hb_002027_030--Hb_000123_220 Hb_025708_010 Hb_025708_010 Hb_002027_030--Hb_025708_010 Hb_005539_260 Hb_005539_260 Hb_002027_030--Hb_005539_260 Hb_001817_100 Hb_001817_100 Hb_002027_030--Hb_001817_100 Hb_168319_010--Hb_012340_060 Hb_168319_010--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_168319_010--Hb_025708_020 Hb_001619_040 Hb_001619_040 Hb_168319_010--Hb_001619_040 Hb_168319_010--Hb_000123_220 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_006120_150 Hb_006120_150 Hb_000123_220--Hb_006120_150 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170 Hb_000123_220--Hb_025708_010 Hb_025708_010--Hb_025708_020 Hb_025708_010--Hb_012340_060 Hb_000123_240 Hb_000123_240 Hb_025708_010--Hb_000123_240 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_000094_120 Hb_000094_120 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_000554_030 Hb_000554_030 Hb_005539_260--Hb_000554_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080 Hb_007590_090 Hb_007590_090 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_002615_030 Hb_002615_030 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25073 6.50633 7.04354 10.9273 0.0989607 0.146543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05898 3.45699 7.52168 8.13648 2.25863

CAGE analysis