Hb_002027_040

Information

Type -
Description -
Location Contig2027: 25110-26519
Sequence    

Annotation

kegg
ID rcu:RCOM_0647910
description synapse-associated protein, putative
nr
ID XP_002524803.1
description synapse-associated protein, putative [Ricinus communis]
swissprot
ID Q5ZIK6
description BSD domain-containing protein 1 OS=Gallus gallus GN=BSDC1 PE=2 SV=1
trembl
ID B9SFN4
description Synapse-associated protein, putative OS=Ricinus communis GN=RCOM_0647910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20668: 24923-26552
cDNA
(Sanger)
(ID:Location)		 027_M22.ab1: 25801-26545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_040 0.0 - - synapse-associated protein, putative [Ricinus communis]
2 Hb_005162_070 0.0559967703 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020805_130 0.0789214008 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_004079_030 0.0826765717 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
5 Hb_000567_120 0.0867460121 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
6 Hb_148113_010 0.0911659306 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
7 Hb_000260_570 0.0912794485 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001959_190 0.0928414499 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
9 Hb_000138_110 0.0933665464 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
10 Hb_000592_020 0.0951006038 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_003053_020 0.0960746646 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
12 Hb_019263_020 0.0966884453 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
13 Hb_011030_020 0.0987938787 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_000373_130 0.0997458577 - - PREDICTED: protein FAM188A [Jatropha curcas]
15 Hb_000748_130 0.1005591314 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
16 Hb_001140_220 0.1015128368 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000120_960 0.1016944429 - - isocitrate dehydrogenase, putative [Ricinus communis]
18 Hb_008695_100 0.1019543909 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
19 Hb_001811_030 0.1030909219 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_001507_040 0.1047013863 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002027_040 Hb_002027_040 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070 Hb_000567_120--Hb_008695_100 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_000567_120--Hb_002005_020 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000023_090 Hb_000023_090 Hb_148113_010--Hb_000023_090 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_028515_010 Hb_028515_010 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4859 9.77163 6.7319 16.3598 8.65266 10.9018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8658 26.1533 45.4545 13.696 15.8029

CAGE analysis