Hb_002027_100

Information

Type -
Description -
Location Contig2027: 41277-42819
Sequence    

Annotation

kegg
ID rcu:RCOM_0647740
description hypothetical protein
nr
ID XP_002524796.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFM7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20679: 41398-42641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001442_050 0.0700292562 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
3 Hb_000483_470 0.1090816363 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_101133_040 0.1134655389 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
5 Hb_000345_400 0.1136275119 - - conserved hypothetical protein [Ricinus communis]
6 Hb_060534_010 0.1201093959 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_000294_020 0.1246081212 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
8 Hb_000928_100 0.1268016897 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_046590_010 0.1318306745 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
10 Hb_061126_010 0.1328997815 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_000538_250 0.133393414 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
12 Hb_033312_120 0.1334019256 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
13 Hb_110266_010 0.1338081724 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
14 Hb_002007_120 0.1338377686 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
15 Hb_000313_250 0.1351178891 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
16 Hb_003777_090 0.1378007362 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
17 Hb_012833_010 0.140322732 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_000123_360 0.1422143512 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_061700_040 0.1422345656 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
20 Hb_007254_010 0.1424647637 - - hypothetical protein JCGZ_25214 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_100 Hb_002027_100 Hb_001442_050 Hb_001442_050 Hb_002027_100--Hb_001442_050 Hb_000483_470 Hb_000483_470 Hb_002027_100--Hb_000483_470 Hb_101133_040 Hb_101133_040 Hb_002027_100--Hb_101133_040 Hb_000345_400 Hb_000345_400 Hb_002027_100--Hb_000345_400 Hb_060534_010 Hb_060534_010 Hb_002027_100--Hb_060534_010 Hb_000294_020 Hb_000294_020 Hb_002027_100--Hb_000294_020 Hb_001442_050--Hb_000345_400 Hb_000358_160 Hb_000358_160 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_001442_050--Hb_110266_010 Hb_001638_190 Hb_001638_190 Hb_001442_050--Hb_001638_190 Hb_000483_470--Hb_000294_020 Hb_003777_090 Hb_003777_090 Hb_000483_470--Hb_003777_090 Hb_004109_140 Hb_004109_140 Hb_000483_470--Hb_004109_140 Hb_000928_100 Hb_000928_100 Hb_000483_470--Hb_000928_100 Hb_000483_470--Hb_060534_010 Hb_000025_700 Hb_000025_700 Hb_000483_470--Hb_000025_700 Hb_002030_020 Hb_002030_020 Hb_101133_040--Hb_002030_020 Hb_101133_040--Hb_060534_010 Hb_000343_050 Hb_000343_050 Hb_101133_040--Hb_000343_050 Hb_012833_010 Hb_012833_010 Hb_101133_040--Hb_012833_010 Hb_135714_010 Hb_135714_010 Hb_101133_040--Hb_135714_010 Hb_000345_400--Hb_001638_190 Hb_000345_400--Hb_000294_020 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_000345_400--Hb_110266_010 Hb_060534_010--Hb_012833_010 Hb_060534_010--Hb_000343_050 Hb_003767_060 Hb_003767_060 Hb_060534_010--Hb_003767_060 Hb_003373_050 Hb_003373_050 Hb_060534_010--Hb_003373_050 Hb_004017_030 Hb_004017_030 Hb_060534_010--Hb_004017_030 Hb_000294_020--Hb_003777_090 Hb_000236_130 Hb_000236_130 Hb_000294_020--Hb_000236_130 Hb_000294_020--Hb_092516_010 Hb_000294_020--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000294_020--Hb_022167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04693 7.37734 40.5858 6.83973 0.567839 0.454239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259191 0.20385 0.44971 0.918556 24.9052

CAGE analysis