Hb_002027_110

Information

Type -
Description -
Location Contig2027: 43314-44802
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13300g
description POPTRDRAFT_664537; methyl-CpG-binding domain-containing family protein
nr
ID XP_012092313.1
description PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas]
swissprot
ID Q9LYB9
description Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1
trembl
ID A0A067JNC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21991 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_110 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas]
2 Hb_000260_080 0.0947043683 - - thioredoxin H-type 1 [Hevea brasiliensis]
3 Hb_008311_010 0.0972964735 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
4 Hb_000883_050 0.0997104238 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
5 Hb_004899_320 0.1003531805 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
6 Hb_003927_130 0.1080461482 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
7 Hb_000061_480 0.1093011993 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
8 Hb_000703_140 0.1095303024 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
9 Hb_001109_020 0.1125666205 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003632_010 0.1131050115 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002749_100 0.1145123291 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
12 Hb_000329_040 0.1148488248 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
13 Hb_000046_110 0.1151916599 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
14 Hb_000086_070 0.1159857493 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
15 Hb_000956_010 0.1160617604 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
16 Hb_000634_100 0.1166348725 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
17 Hb_003216_100 0.1167311105 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
18 Hb_001538_110 0.1169250576 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
19 Hb_000302_220 0.117552998 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_010672_070 0.1181302238 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]

Gene co-expression network

sample Hb_002027_110 Hb_002027_110 Hb_000260_080 Hb_000260_080 Hb_002027_110--Hb_000260_080 Hb_008311_010 Hb_008311_010 Hb_002027_110--Hb_008311_010 Hb_000883_050 Hb_000883_050 Hb_002027_110--Hb_000883_050 Hb_004899_320 Hb_004899_320 Hb_002027_110--Hb_004899_320 Hb_003927_130 Hb_003927_130 Hb_002027_110--Hb_003927_130 Hb_000061_480 Hb_000061_480 Hb_002027_110--Hb_000061_480 Hb_000703_140 Hb_000703_140 Hb_000260_080--Hb_000703_140 Hb_000329_040 Hb_000329_040 Hb_000260_080--Hb_000329_040 Hb_011794_070 Hb_011794_070 Hb_000260_080--Hb_011794_070 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020 Hb_000046_110 Hb_000046_110 Hb_008311_010--Hb_000046_110 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_008311_010--Hb_000001_050 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_008311_010--Hb_004899_320 Hb_001109_020 Hb_001109_020 Hb_008311_010--Hb_001109_020 Hb_000883_050--Hb_011794_070 Hb_000883_050--Hb_001109_020 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000883_050--Hb_000703_140 Hb_005488_010 Hb_005488_010 Hb_004899_320--Hb_005488_010 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_004899_320--Hb_000329_040 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_003927_130--Hb_001109_020 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_000190_060 Hb_000190_060 Hb_000061_480--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_000061_480--Hb_009252_130 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000061_480--Hb_000703_140 Hb_001214_030 Hb_001214_030 Hb_000061_480--Hb_001214_030 Hb_000061_480--Hb_000531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9311 2.52854 3.98263 5.13819 13.7367 15.3315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6799 32.4088 24.4529 1.60379 3.8539

CAGE analysis