Hb_002027_130

Information

Type -
Description -
Location Contig2027: 60995-63890
Sequence    

Annotation

kegg
ID tcc:TCM_004482
description DNAse I-like superfamily protein
nr
ID XP_012092317.1
description PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21993 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dnase i-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20682: 61628-62834 , PASA_asmbl_20683: 63146-63742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_130 0.0 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
2 Hb_000436_070 0.0699493499 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
3 Hb_007908_020 0.0708659856 - - zinc finger family protein [Populus trichocarpa]
4 Hb_000025_200 0.0809086871 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
5 Hb_000001_020 0.0826675239 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
6 Hb_003609_040 0.0830485377 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
7 Hb_000120_950 0.0833360652 - - PREDICTED: protein GRIP [Jatropha curcas]
8 Hb_002477_160 0.0866064699 - - hypothetical protein L484_013453 [Morus notabilis]
9 Hb_007558_140 0.0872837809 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
10 Hb_011918_080 0.0960464418 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
11 Hb_153258_010 0.0965046601 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
12 Hb_182026_020 0.0972477367 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
13 Hb_000030_010 0.0979235472 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_001623_420 0.0986505777 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000943_070 0.0995462791 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
16 Hb_001051_100 0.1020410807 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
17 Hb_000997_210 0.1026394534 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
18 Hb_002685_140 0.1029469787 - - PREDICTED: membrin-11 [Jatropha curcas]
19 Hb_000386_040 0.1045329081 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_010863_080 0.1052620471 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002027_130 Hb_002027_130 Hb_000436_070 Hb_000436_070 Hb_002027_130--Hb_000436_070 Hb_007908_020 Hb_007908_020 Hb_002027_130--Hb_007908_020 Hb_000025_200 Hb_000025_200 Hb_002027_130--Hb_000025_200 Hb_000001_020 Hb_000001_020 Hb_002027_130--Hb_000001_020 Hb_003609_040 Hb_003609_040 Hb_002027_130--Hb_003609_040 Hb_000120_950 Hb_000120_950 Hb_002027_130--Hb_000120_950 Hb_000436_070--Hb_000120_950 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_000620_010 Hb_000620_010 Hb_000436_070--Hb_000620_010 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130 Hb_007908_020--Hb_000025_200 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_007908_020--Hb_000120_950 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_000025_200--Hb_000001_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002368_050 Hb_002368_050 Hb_000025_200--Hb_002368_050 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_000001_020--Hb_003609_040 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020 Hb_007547_010 Hb_007547_010 Hb_003609_040--Hb_007547_010 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_000030_010 Hb_000030_010 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003297_030 Hb_003297_030 Hb_003609_040--Hb_003297_030 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000120_950--Hb_002477_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5715 7.60288 6.46987 8.50524 24.7945 18.2343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4233 12.4602 25.028 4.32412 3.65155

CAGE analysis