Hb_002027_140

Information

Type -
Description -
Location Contig2027: 64733-66959
Sequence    

Annotation

kegg
ID cit:102611689
description probable indole-3-acetic acid-amido synthetase GH3.6-like
nr
ID XP_012092494.1
description PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
swissprot
ID Q60EY1
description Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2
trembl
ID A0A067JPR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21995 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20683: 63146-63742 , PASA_asmbl_20684: 64819-65229 , PASA_asmbl_20685: 65540-66200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_140 0.0 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
2 Hb_009687_010 0.1079587045 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
3 Hb_006816_200 0.1101850587 - - conserved hypothetical protein [Ricinus communis]
4 Hb_109002_020 0.1231790013 - - PREDICTED: CTP synthase-like [Jatropha curcas]
5 Hb_004064_010 0.1246204566 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
6 Hb_006114_010 0.1264056867 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
7 Hb_003266_100 0.130601773 - - Isomerase protein [Gossypium arboreum]
8 Hb_000329_760 0.1306170881 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
9 Hb_105602_010 0.1309136392 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
10 Hb_002814_070 0.1309237651 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
11 Hb_001414_030 0.1339259405 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
12 Hb_002534_120 0.135321845 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
13 Hb_002197_050 0.1378872014 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
14 Hb_000003_320 0.1409578374 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
15 Hb_012490_070 0.142172705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_016522_010 0.1430210648 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
17 Hb_077562_030 0.143158445 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
18 Hb_002835_100 0.143180133 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
19 Hb_001102_240 0.1459733037 - - PREDICTED: NADH kinase isoform X1 [Jatropha curcas]
20 Hb_000103_270 0.1461673069 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_002027_140 Hb_002027_140 Hb_009687_010 Hb_009687_010 Hb_002027_140--Hb_009687_010 Hb_006816_200 Hb_006816_200 Hb_002027_140--Hb_006816_200 Hb_109002_020 Hb_109002_020 Hb_002027_140--Hb_109002_020 Hb_004064_010 Hb_004064_010 Hb_002027_140--Hb_004064_010 Hb_006114_010 Hb_006114_010 Hb_002027_140--Hb_006114_010 Hb_003266_100 Hb_003266_100 Hb_002027_140--Hb_003266_100 Hb_000103_270 Hb_000103_270 Hb_009687_010--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_009687_010--Hb_005914_010 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_006698_030 Hb_006698_030 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760 Hb_004800_070 Hb_004800_070 Hb_006816_200--Hb_004800_070 Hb_006816_200--Hb_006114_010 Hb_000252_170 Hb_000252_170 Hb_006816_200--Hb_000252_170 Hb_006816_200--Hb_009687_010 Hb_002471_150 Hb_002471_150 Hb_006816_200--Hb_002471_150 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_109002_020--Hb_004064_010 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_109002_020--Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_004064_010--Hb_105602_010 Hb_004064_010--Hb_000621_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030 Hb_000120_470 Hb_000120_470 Hb_006114_010--Hb_000120_470 Hb_010883_090 Hb_010883_090 Hb_006114_010--Hb_010883_090 Hb_005539_280 Hb_005539_280 Hb_006114_010--Hb_005539_280 Hb_086639_030 Hb_086639_030 Hb_006114_010--Hb_086639_030 Hb_000805_020 Hb_000805_020 Hb_006114_010--Hb_000805_020 Hb_000976_170 Hb_000976_170 Hb_006114_010--Hb_000976_170 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38261 3.50613 2.92152 1.83813 2.9739 3.5582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9177 8.66975 4.81753 11.4333 2.70306

CAGE analysis