Hb_002027_150

Information

Type -
Description -
Location Contig2027: 68640-71663
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20687: 68735-74255 , PASA_asmbl_20688: 69889-70035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_150 0.0 - - -
2 Hb_006869_010 0.2314449592 - - unnamed protein product [Coffea canephora]
3 Hb_033363_070 0.2422646719 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
4 Hb_000097_010 0.2721859097 - - -
5 Hb_001571_110 0.2792677537 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
6 Hb_001017_060 0.2808872164 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_001301_050 0.2879494776 - - -
8 Hb_000258_030 0.2932037172 - - -
9 Hb_000184_100 0.299330289 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
10 Hb_001789_130 0.2997140989 - - short-chain dehydrogenase Tic32 family protein [Populus trichocarpa]
11 Hb_023711_010 0.3001758071 - - -
12 Hb_003405_060 0.301201727 - - -
13 Hb_002636_150 0.3016614896 - - -
14 Hb_000656_100 0.3037185572 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
15 Hb_005615_080 0.3041601457 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
16 Hb_002849_040 0.3041908434 - - caax prenyl protease ste24, putative [Ricinus communis]
17 Hb_029142_070 0.3049233567 - - -
18 Hb_012052_010 0.3057546527 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
19 Hb_001565_030 0.3075606151 - - -
20 Hb_140543_010 0.3076593607 - - -

Gene co-expression network

sample Hb_002027_150 Hb_002027_150 Hb_006869_010 Hb_006869_010 Hb_002027_150--Hb_006869_010 Hb_033363_070 Hb_033363_070 Hb_002027_150--Hb_033363_070 Hb_000097_010 Hb_000097_010 Hb_002027_150--Hb_000097_010 Hb_001571_110 Hb_001571_110 Hb_002027_150--Hb_001571_110 Hb_001017_060 Hb_001017_060 Hb_002027_150--Hb_001017_060 Hb_001301_050 Hb_001301_050 Hb_002027_150--Hb_001301_050 Hb_001401_080 Hb_001401_080 Hb_006869_010--Hb_001401_080 Hb_000752_050 Hb_000752_050 Hb_006869_010--Hb_000752_050 Hb_006269_050 Hb_006269_050 Hb_006869_010--Hb_006269_050 Hb_005565_060 Hb_005565_060 Hb_006869_010--Hb_005565_060 Hb_000982_110 Hb_000982_110 Hb_006869_010--Hb_000982_110 Hb_000087_030 Hb_000087_030 Hb_033363_070--Hb_000087_030 Hb_012052_010 Hb_012052_010 Hb_033363_070--Hb_012052_010 Hb_005714_130 Hb_005714_130 Hb_033363_070--Hb_005714_130 Hb_000051_170 Hb_000051_170 Hb_033363_070--Hb_000051_170 Hb_000656_100 Hb_000656_100 Hb_033363_070--Hb_000656_100 Hb_004060_030 Hb_004060_030 Hb_033363_070--Hb_004060_030 Hb_000097_010--Hb_001571_110 Hb_011644_010 Hb_011644_010 Hb_000097_010--Hb_011644_010 Hb_140543_010 Hb_140543_010 Hb_000097_010--Hb_140543_010 Hb_006541_020 Hb_006541_020 Hb_000097_010--Hb_006541_020 Hb_172706_030 Hb_172706_030 Hb_000097_010--Hb_172706_030 Hb_000025_240 Hb_000025_240 Hb_000097_010--Hb_000025_240 Hb_007894_230 Hb_007894_230 Hb_001571_110--Hb_007894_230 Hb_014834_040 Hb_014834_040 Hb_001571_110--Hb_014834_040 Hb_001571_110--Hb_140543_010 Hb_002078_260 Hb_002078_260 Hb_001571_110--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_001571_110--Hb_001935_150 Hb_008221_110 Hb_008221_110 Hb_001017_060--Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_001017_060--Hb_175976_010 Hb_007534_020 Hb_007534_020 Hb_001017_060--Hb_007534_020 Hb_000258_030 Hb_000258_030 Hb_001017_060--Hb_000258_030 Hb_001017_060--Hb_014834_040 Hb_001017_060--Hb_011644_010 Hb_003494_050 Hb_003494_050 Hb_001301_050--Hb_003494_050 Hb_006573_020 Hb_006573_020 Hb_001301_050--Hb_006573_020 Hb_024758_010 Hb_024758_010 Hb_001301_050--Hb_024758_010 Hb_001635_130 Hb_001635_130 Hb_001301_050--Hb_001635_130 Hb_023711_010 Hb_023711_010 Hb_001301_050--Hb_023711_010 Hb_000302_280 Hb_000302_280 Hb_001301_050--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0944934 0 0 0.128761 0.0391445 0.2782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0966608 0.379857 0 0.0622047 0.147704

CAGE analysis