Hb_002027_170

Information

Type -
Description -
Location Contig2027: 75050-76951
Sequence    

Annotation

kegg
ID rcu:RCOM_0647050
description kinase, putative (EC:2.7.11.30)
nr
ID XP_012092322.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
swissprot
ID P93050
description Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=2 SV=1
trembl
ID A0A067JCF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21997 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase rkf3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20690: 74867-76999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_170 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
2 Hb_001049_160 0.128067659 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_005054_170 0.1526410155 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
4 Hb_000056_280 0.1558711324 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_001318_140 0.160982754 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
6 Hb_065525_010 0.1611018 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
7 Hb_000836_600 0.162724702 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
8 Hb_007163_040 0.1638369685 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
9 Hb_004724_330 0.1643784795 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
10 Hb_014720_050 0.1655857593 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
11 Hb_006938_040 0.1674627937 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
12 Hb_004126_030 0.1679230157 - - kinase, putative [Ricinus communis]
13 Hb_004013_020 0.1720581094 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
14 Hb_002876_250 0.1730023825 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
15 Hb_000200_170 0.1748546497 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
16 Hb_002571_070 0.1764460759 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
17 Hb_000805_190 0.1793406124 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
18 Hb_062479_010 0.1798171866 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
19 Hb_001242_190 0.1801773683 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
20 Hb_000056_080 0.1802447982 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002027_170 Hb_002027_170 Hb_001049_160 Hb_001049_160 Hb_002027_170--Hb_001049_160 Hb_005054_170 Hb_005054_170 Hb_002027_170--Hb_005054_170 Hb_000056_280 Hb_000056_280 Hb_002027_170--Hb_000056_280 Hb_001318_140 Hb_001318_140 Hb_002027_170--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_002876_250 Hb_002876_250 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001049_160--Hb_001318_140 Hb_000062_640 Hb_000062_640 Hb_005054_170--Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_005054_170--Hb_000028_340 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_001318_140--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_001318_140--Hb_000087_100 Hb_006052_060 Hb_006052_060 Hb_001318_140--Hb_006052_060 Hb_001318_140--Hb_001619_160 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_065525_010--Hb_001242_190 Hb_013405_100 Hb_013405_100 Hb_065525_010--Hb_013405_100 Hb_065525_010--Hb_001619_160 Hb_065525_010--Hb_006052_060 Hb_065525_010--Hb_149484_010 Hb_001133_010 Hb_001133_010 Hb_000836_600--Hb_001133_010 Hb_004013_020 Hb_004013_020 Hb_000836_600--Hb_004013_020 Hb_000200_170 Hb_000200_170 Hb_000836_600--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_000836_600--Hb_143766_030 Hb_000836_600--Hb_002876_250 Hb_002849_070 Hb_002849_070 Hb_000836_600--Hb_002849_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0524865 3.79649 0.599228 2.87197 0.273571 0.225384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143194 0.488222 0.426707 1.12862 1.34721

CAGE analysis