Hb_002027_180

Information

Type -
Description -
Location Contig2027: 83205-85688
Sequence    

Annotation

kegg
ID rcu:RCOM_0647040
description ATP binding protein, putative (EC:2.7.11.30)
nr
ID XP_012092323.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
swissprot
ID Q8RXC8
description Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1
trembl
ID B9SFK8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0647040 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like cytosolic serine threonine-protein kinase rbk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20691: 85443-85677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_180 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
2 Hb_003992_040 0.1323792408 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
3 Hb_013358_090 0.1364009667 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
4 Hb_086765_010 0.1489580093 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
5 Hb_026228_020 0.1559492607 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
6 Hb_001829_040 0.1575689837 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
7 Hb_004117_160 0.1585923317 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
8 Hb_000890_230 0.15861144 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
9 Hb_181441_010 0.1616605782 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_005527_020 0.1646479794 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
11 Hb_013358_080 0.166612273 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
12 Hb_000359_140 0.1675550789 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
13 Hb_000260_600 0.1682984871 - - conserved hypothetical protein [Ricinus communis]
14 Hb_150023_010 0.1713997495 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_004040_030 0.1720190404 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
16 Hb_000053_030 0.1730672338 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
17 Hb_000107_080 0.1743589203 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
18 Hb_001217_040 0.1748015202 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
19 Hb_005170_010 0.175744348 - - -
20 Hb_181328_010 0.1771405943 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_180 Hb_002027_180 Hb_003992_040 Hb_003992_040 Hb_002027_180--Hb_003992_040 Hb_013358_090 Hb_013358_090 Hb_002027_180--Hb_013358_090 Hb_086765_010 Hb_086765_010 Hb_002027_180--Hb_086765_010 Hb_026228_020 Hb_026228_020 Hb_002027_180--Hb_026228_020 Hb_001829_040 Hb_001829_040 Hb_002027_180--Hb_001829_040 Hb_004117_160 Hb_004117_160 Hb_002027_180--Hb_004117_160 Hb_003992_040--Hb_026228_020 Hb_003992_040--Hb_001829_040 Hb_002084_010 Hb_002084_010 Hb_003992_040--Hb_002084_010 Hb_012760_130 Hb_012760_130 Hb_003992_040--Hb_012760_130 Hb_000617_010 Hb_000617_010 Hb_003992_040--Hb_000617_010 Hb_181328_010 Hb_181328_010 Hb_013358_090--Hb_181328_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_099878_050 Hb_099878_050 Hb_013358_090--Hb_099878_050 Hb_000053_030 Hb_000053_030 Hb_013358_090--Hb_000053_030 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030 Hb_086765_010--Hb_181328_010 Hb_086765_010--Hb_013358_090 Hb_086765_010--Hb_013358_080 Hb_116420_040 Hb_116420_040 Hb_086765_010--Hb_116420_040 Hb_102591_010 Hb_102591_010 Hb_086765_010--Hb_102591_010 Hb_005023_030 Hb_005023_030 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_001135_140 Hb_001135_140 Hb_026228_020--Hb_001135_140 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_000107_200 Hb_000107_200 Hb_004117_160--Hb_000107_200 Hb_001948_130 Hb_001948_130 Hb_004117_160--Hb_001948_130 Hb_003010_020 Hb_003010_020 Hb_004117_160--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_004117_160--Hb_032050_040 Hb_000022_020 Hb_000022_020 Hb_004117_160--Hb_000022_020 Hb_152202_010 Hb_152202_010 Hb_004117_160--Hb_152202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.511413 0.622989 0.305105 1.67719 0.299334 1.26672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.345108 0.468964 0.139098 0.295582 0.671165

CAGE analysis