Hb_002027_260

Information

Type -
Description -
Location Contig2027: 142115-145020
Sequence    

Annotation

kegg
ID rcu:RCOM_0646940
description Gibberellin receptor GID1, putative
nr
ID XP_012092333.1
description PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
swissprot
ID Q9LYC1
description Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1
trembl
ID A0A067JFG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22004 PE=4 SV=1
Gene Ontology
ID GO:0016787
description gibberellin receptor gid1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20707: 141672-144792 , PASA_asmbl_20708: 143687-143937 , PASA_asmbl_20710: 144847-144992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_260 0.0 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
2 Hb_006400_040 0.0636351058 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
3 Hb_012634_010 0.0674811626 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
4 Hb_001623_420 0.0687318856 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_001728_100 0.0724926845 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
6 Hb_000236_100 0.0732136213 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
7 Hb_002375_020 0.0736260587 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
8 Hb_001252_010 0.0756783274 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
9 Hb_005306_110 0.0792934926 - - casein kinase, putative [Ricinus communis]
10 Hb_005307_030 0.0809507842 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
11 Hb_000032_320 0.084395963 - - protein binding protein, putative [Ricinus communis]
12 Hb_000224_170 0.0851911697 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
13 Hb_001584_330 0.0852325705 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
14 Hb_000155_190 0.0858057931 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001595_030 0.0860331946 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
16 Hb_000977_070 0.0882589501 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
17 Hb_001677_210 0.0896504675 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
18 Hb_010381_070 0.0898716079 - - PREDICTED: protein STU1-like [Jatropha curcas]
19 Hb_156850_030 0.0904093415 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
20 Hb_001301_160 0.0912758103 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002027_260 Hb_002027_260 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_006400_040--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_006400_040--Hb_005306_110 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_001790_020 Hb_001790_020 Hb_012634_010--Hb_001790_020 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_001571_040 Hb_001571_040 Hb_012634_010--Hb_001571_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_156850_030 Hb_156850_030 Hb_001728_100--Hb_156850_030 Hb_000032_320 Hb_000032_320 Hb_001728_100--Hb_000032_320 Hb_000107_500 Hb_000107_500 Hb_001728_100--Hb_000107_500 Hb_004204_080 Hb_004204_080 Hb_001728_100--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_001728_100--Hb_000077_070 Hb_001541_260 Hb_001541_260 Hb_000236_100--Hb_001541_260 Hb_004162_280 Hb_004162_280 Hb_000236_100--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_000236_100--Hb_144787_030 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_002375_020--Hb_010381_070 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_004109_200 Hb_004109_200 Hb_002375_020--Hb_004109_200 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.2271 36.7205 13.9907 21.767 50.2168 48.5129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8636 42.0987 39.5882 20.4355 10.8367

CAGE analysis