Hb_002027_270

Information

Type -
Description -
Location Contig2027: 151600-161598
Sequence    

Annotation

kegg
ID rcu:RCOM_0557160
description bsu-protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012092339.1
description PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
swissprot
ID Q8L7U5
description Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=2
trembl
ID A0A067JCK6
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_22008 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase bsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20711: 151623-162009 , PASA_asmbl_20712: 157013-157252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_270 0.0 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
2 Hb_025012_010 0.0605591877 - - PREDICTED: importin-4 [Vitis vinifera]
3 Hb_004619_050 0.0663766569 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
4 Hb_000567_050 0.0673968141 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
5 Hb_000031_220 0.0677836331 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
6 Hb_000600_070 0.0684976239 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
7 Hb_000429_120 0.0693465618 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
8 Hb_003428_070 0.0693611069 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
9 Hb_000271_090 0.0761057973 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_002784_060 0.076130212 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
11 Hb_011716_020 0.0766450172 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
12 Hb_004450_010 0.0767011493 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_005494_020 0.0784623268 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
14 Hb_033834_060 0.0789690229 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
15 Hb_004370_030 0.0829828567 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
16 Hb_016898_010 0.0834318739 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_000316_030 0.0834769526 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000023_190 0.0839769771 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_006252_040 0.0879106504 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
20 Hb_001866_110 0.0885496165 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]

Gene co-expression network

sample Hb_002027_270 Hb_002027_270 Hb_025012_010 Hb_025012_010 Hb_002027_270--Hb_025012_010 Hb_004619_050 Hb_004619_050 Hb_002027_270--Hb_004619_050 Hb_000567_050 Hb_000567_050 Hb_002027_270--Hb_000567_050 Hb_000031_220 Hb_000031_220 Hb_002027_270--Hb_000031_220 Hb_000600_070 Hb_000600_070 Hb_002027_270--Hb_000600_070 Hb_000429_120 Hb_000429_120 Hb_002027_270--Hb_000429_120 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_032458_010 Hb_032458_010 Hb_004619_050--Hb_032458_010 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_004619_050--Hb_003428_070 Hb_004619_050--Hb_000429_120 Hb_000567_050--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000600_070--Hb_000743_040 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_003428_070 Hb_000600_070--Hb_000023_190 Hb_001866_110 Hb_001866_110 Hb_000429_120--Hb_001866_110 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7854 12.0312 4.70506 10.5671 17.3406 33.8991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7724 9.27107 10.8157 15.6384 8.37989

CAGE analysis