Hb_002027_280

Information

Type -
Description -
Location Contig2027: 162565-173200
Sequence    

Annotation

kegg
ID rcu:RCOM_0557120
description stromal antigen, putative
nr
ID XP_012092345.1
description PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
swissprot
ID O82265
description Sister-chromatid cohesion protein 3 OS=Arabidopsis thaliana GN=SCC3 PE=1 SV=2
trembl
ID A0A067JCH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22012 PE=4 SV=1
Gene Ontology
ID GO:0005488
description sister-chromatid cohesion protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20713: 162596-172952 , PASA_asmbl_20714: 172121-172571 , PASA_asmbl_20715: 173290-176110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_280 0.0 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
2 Hb_004429_010 0.0360789844 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_003124_160 0.0563009269 - - dynamin, putative [Ricinus communis]
4 Hb_001904_030 0.0607371901 - - PREDICTED: importin-5 [Jatropha curcas]
5 Hb_001673_050 0.0615533539 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
6 Hb_001277_300 0.0616492402 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
7 Hb_000352_070 0.0637223666 - - Potassium transporter, putative [Ricinus communis]
8 Hb_001221_090 0.064739971 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
9 Hb_000479_240 0.0667834423 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_001231_090 0.0671144676 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_000949_020 0.0676256814 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
12 Hb_005832_010 0.0683057367 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
13 Hb_009252_050 0.0695474915 - - protein binding protein, putative [Ricinus communis]
14 Hb_002284_170 0.0705311413 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
15 Hb_000703_130 0.0713239687 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_007818_030 0.0723026709 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
17 Hb_000008_240 0.0731358007 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000176_100 0.0733559959 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
19 Hb_003581_170 0.0736126161 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
20 Hb_001318_070 0.0738972639 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002027_280 Hb_002027_280 Hb_004429_010 Hb_004429_010 Hb_002027_280--Hb_004429_010 Hb_003124_160 Hb_003124_160 Hb_002027_280--Hb_003124_160 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_001904_030--Hb_001221_090 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_001673_050--Hb_004429_010 Hb_002542_130 Hb_002542_130 Hb_001277_300--Hb_002542_130 Hb_000243_210 Hb_000243_210 Hb_001277_300--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_001277_300--Hb_001318_070 Hb_001231_090 Hb_001231_090 Hb_001277_300--Hb_001231_090 Hb_089140_050 Hb_089140_050 Hb_001277_300--Hb_089140_050 Hb_134362_010 Hb_134362_010 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_000352_070--Hb_004429_010 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2581 39.5703 20.7998 22.8927 25.3039 20.7244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7236 8.34243 10.1883 19.5822 24.5252

CAGE analysis