Hb_002027_290

Information

Type -
Description -
Location Contig2027: 173305-176143
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13120g
description POPTRDRAFT_731936; hypothetical protein
nr
ID XP_012092346.1
description PREDICTED: NPL4-like protein 1 [Jatropha curcas]
swissprot
ID Q9LYC2
description NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000 PE=1 SV=1
trembl
ID A0A067JCL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22013 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20715: 173290-176110
cDNA
(Sanger)
(ID:Location)		 038_C13.ab1: 175310-176110

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_290 0.0 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
2 Hb_000608_320 0.0466281163 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
3 Hb_000318_290 0.0742824942 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
4 Hb_002740_180 0.0754871415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000127_040 0.0787334231 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
6 Hb_000343_120 0.0795910041 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
7 Hb_001199_100 0.0807795733 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
8 Hb_000028_280 0.080867519 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
9 Hb_002053_080 0.0816078875 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
10 Hb_005065_010 0.0817765434 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
11 Hb_002213_070 0.0822056703 - - epsilon-adaptin family protein [Populus trichocarpa]
12 Hb_001377_270 0.083001145 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
13 Hb_012022_090 0.0834142564 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
14 Hb_002811_060 0.0846598467 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
15 Hb_000890_210 0.0848817802 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
16 Hb_054865_150 0.0850073768 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
17 Hb_002716_130 0.0858247714 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
18 Hb_000613_050 0.0869344782 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
19 Hb_000116_500 0.0869864527 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
20 Hb_009545_100 0.0881053233 - - PREDICTED: protein OBERON 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_290 Hb_002027_290 Hb_000608_320 Hb_000608_320 Hb_002027_290--Hb_000608_320 Hb_000318_290 Hb_000318_290 Hb_002027_290--Hb_000318_290 Hb_002740_180 Hb_002740_180 Hb_002027_290--Hb_002740_180 Hb_000127_040 Hb_000127_040 Hb_002027_290--Hb_000127_040 Hb_000343_120 Hb_000343_120 Hb_002027_290--Hb_000343_120 Hb_001199_100 Hb_001199_100 Hb_002027_290--Hb_001199_100 Hb_000608_320--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_000608_320--Hb_005170_040 Hb_003777_310 Hb_003777_310 Hb_000608_320--Hb_003777_310 Hb_002716_130 Hb_002716_130 Hb_000608_320--Hb_002716_130 Hb_002811_060 Hb_002811_060 Hb_000608_320--Hb_002811_060 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_005054_100 Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_000185_040 Hb_000185_040 Hb_002740_180--Hb_000185_040 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480 Hb_002213_070 Hb_002213_070 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_000127_040--Hb_054865_150 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.77677 10.5415 3.61185 13.7263 14.0698 16.3904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33652 9.31513 11.7932 10.9057 10.0256

CAGE analysis