Hb_002027_350

Information

Type -
Description -
Location Contig2027: 203222-207260
Sequence    

Annotation

kegg
ID tcc:TCM_043735
description C2H2 and C2HC zinc fingers superfamily protein isoform 1
nr
ID XP_012070589.1
description PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
swissprot
ID F6HQ26
description U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1
trembl
ID A0A067KTD1
description U1 small nuclear ribonucleoprotein C OS=Jatropha curcas GN=JCGZ_03689 PE=3 SV=1
Gene Ontology
ID GO:0005685
description u1 small nuclear ribonucleoprotein c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20723: 203342-207023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_350 0.0 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
2 Hb_000164_100 0.063628697 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
3 Hb_000099_150 0.0724580015 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
4 Hb_011618_060 0.0773939347 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
5 Hb_003669_020 0.0894911834 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
6 Hb_002534_100 0.0904380034 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
7 Hb_000010_190 0.0920147029 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
8 Hb_004712_210 0.0935663952 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
9 Hb_008225_090 0.0969832296 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
10 Hb_000270_310 0.0980207355 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
11 Hb_019280_050 0.0982023955 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
12 Hb_000176_020 0.0993804134 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
13 Hb_012565_070 0.0994180203 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_017987_050 0.0995166444 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
15 Hb_005116_060 0.0997502091 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
16 Hb_000270_470 0.1004843344 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
17 Hb_000738_020 0.101470131 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001470_030 0.1032473961 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
19 Hb_000729_030 0.1040729084 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
20 Hb_001691_140 0.1042800287 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002027_350 Hb_002027_350 Hb_000164_100 Hb_000164_100 Hb_002027_350--Hb_000164_100 Hb_000099_150 Hb_000099_150 Hb_002027_350--Hb_000099_150 Hb_011618_060 Hb_011618_060 Hb_002027_350--Hb_011618_060 Hb_003669_020 Hb_003669_020 Hb_002027_350--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_002027_350--Hb_002534_100 Hb_000010_190 Hb_000010_190 Hb_002027_350--Hb_000010_190 Hb_044653_040 Hb_044653_040 Hb_000164_100--Hb_044653_040 Hb_000176_020 Hb_000176_020 Hb_000164_100--Hb_000176_020 Hb_000164_100--Hb_003669_020 Hb_000164_100--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_000164_100--Hb_004712_210 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_011618_060--Hb_000099_150 Hb_006153_110 Hb_006153_110 Hb_011618_060--Hb_006153_110 Hb_011618_060--Hb_000164_100 Hb_011618_060--Hb_000010_190 Hb_011618_060--Hb_001691_140 Hb_005843_140 Hb_005843_140 Hb_003669_020--Hb_005843_140 Hb_003669_020--Hb_044653_040 Hb_006198_070 Hb_006198_070 Hb_003669_020--Hb_006198_070 Hb_000310_020 Hb_000310_020 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_000505_130 Hb_000505_130 Hb_003669_020--Hb_000505_130 Hb_002534_100--Hb_004712_210 Hb_002303_020 Hb_002303_020 Hb_002534_100--Hb_002303_020 Hb_002534_100--Hb_044653_040 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_000336_150 Hb_000336_150 Hb_000010_190--Hb_000336_150 Hb_001470_030 Hb_001470_030 Hb_000010_190--Hb_001470_030 Hb_000010_190--Hb_006153_110 Hb_001723_020 Hb_001723_020 Hb_000010_190--Hb_001723_020 Hb_004324_090 Hb_004324_090 Hb_000010_190--Hb_004324_090 Hb_006478_040 Hb_006478_040 Hb_000010_190--Hb_006478_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7186 22.153 25.3563 14.5394 9.3664 9.34862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4449 34.3737 13.9034 19.1206 15.1468

CAGE analysis