Hb_002027_370

Information

Type -
Description -
Location Contig2027: 221431-223214
Sequence    

Annotation

kegg
ID rcu:RCOM_0556800
description hypothetical protein
nr
ID XP_002520696.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FVS1
description F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1
trembl
ID B9S3X7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g57790-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017214_050 0.0022753172 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_074683_010 0.0278832887 - - -
4 Hb_001994_010 0.1254036605 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_015836_010 0.1342729408 - - -
6 Hb_005389_130 0.195638537 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
7 Hb_001066_010 0.2927389029 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_033594_010 0.2981881465 - - -
9 Hb_000445_240 0.3215522685 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000976_370 0.3335605567 - - beta-glucosidase, putative [Ricinus communis]
11 Hb_120112_010 0.3335769549 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_008689_020 0.3336242302 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010803_010 0.3344079169 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_028271_010 0.3354114347 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
15 Hb_001221_460 0.3437472698 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_017170_010 0.362909198 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
17 Hb_010232_010 0.3701134068 - - -
18 Hb_000622_320 0.3781709162 - - PREDICTED: chitinase 1-like [Vitis vinifera]
19 Hb_106496_010 0.3791813825 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_002641_110 0.3866171354 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]

Gene co-expression network

sample Hb_002027_370 Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_002027_370--Hb_017214_050 Hb_074683_010 Hb_074683_010 Hb_002027_370--Hb_074683_010 Hb_001994_010 Hb_001994_010 Hb_002027_370--Hb_001994_010 Hb_015836_010 Hb_015836_010 Hb_002027_370--Hb_015836_010 Hb_005389_130 Hb_005389_130 Hb_002027_370--Hb_005389_130 Hb_001066_010 Hb_001066_010 Hb_002027_370--Hb_001066_010 Hb_017214_050--Hb_074683_010 Hb_017214_050--Hb_001994_010 Hb_017214_050--Hb_015836_010 Hb_017214_050--Hb_005389_130 Hb_017214_050--Hb_001066_010 Hb_074683_010--Hb_001994_010 Hb_074683_010--Hb_015836_010 Hb_074683_010--Hb_005389_130 Hb_033594_010 Hb_033594_010 Hb_074683_010--Hb_033594_010 Hb_001994_010--Hb_005389_130 Hb_001994_010--Hb_015836_010 Hb_001994_010--Hb_033594_010 Hb_015836_010--Hb_005389_130 Hb_106496_010 Hb_106496_010 Hb_015836_010--Hb_106496_010 Hb_012654_030 Hb_012654_030 Hb_005389_130--Hb_012654_030 Hb_000622_320 Hb_000622_320 Hb_001066_010--Hb_000622_320 Hb_001066_010--Hb_074683_010 Hb_001066_010--Hb_015836_010 Hb_001066_010--Hb_001994_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224012 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0403589 0 0.0162341 0

CAGE analysis