Hb_002027_390

Information

Type -
Description -
Location Contig2027: 226768-231794
Sequence    

Annotation

kegg
ID rcu:RCOM_0556770
description shikimate dehydrogenase, putative (EC:1.1.1.25 4.2.1.10)
nr
ID XP_002520694.1
description shikimate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID B9S3X5
description Shikimate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0556770 PE=3 SV=1
Gene Ontology
ID GO:0003855
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_390 0.0 - - shikimate dehydrogenase, putative [Ricinus communis]
2 Hb_001221_570 0.079162595 - - -
3 Hb_006538_090 0.114242312 - - PREDICTED: IST1 homolog [Jatropha curcas]
4 Hb_007894_170 0.1177068605 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
5 Hb_003041_050 0.1218151651 - - -
6 Hb_000555_100 0.1258919794 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
7 Hb_168893_020 0.1261947142 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
8 Hb_001301_110 0.1275165349 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
9 Hb_000538_120 0.1323403371 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
10 Hb_001096_090 0.1380989571 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
11 Hb_007894_060 0.1390285817 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
12 Hb_055320_010 0.1396732084 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
13 Hb_000923_090 0.1405361299 - - -
14 Hb_001369_250 0.1406661729 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
15 Hb_002228_070 0.1409624092 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
16 Hb_066720_010 0.1411926611 - - PREDICTED: histone H2B [Jatropha curcas]
17 Hb_005588_060 0.1412650979 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
18 Hb_000302_140 0.1418288738 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
19 Hb_004005_020 0.142132898 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_004734_040 0.1422986105 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]

Gene co-expression network

sample Hb_002027_390 Hb_002027_390 Hb_001221_570 Hb_001221_570 Hb_002027_390--Hb_001221_570 Hb_006538_090 Hb_006538_090 Hb_002027_390--Hb_006538_090 Hb_007894_170 Hb_007894_170 Hb_002027_390--Hb_007894_170 Hb_003041_050 Hb_003041_050 Hb_002027_390--Hb_003041_050 Hb_000555_100 Hb_000555_100 Hb_002027_390--Hb_000555_100 Hb_168893_020 Hb_168893_020 Hb_002027_390--Hb_168893_020 Hb_000139_470 Hb_000139_470 Hb_001221_570--Hb_000139_470 Hb_001221_570--Hb_168893_020 Hb_001221_570--Hb_006538_090 Hb_000163_050 Hb_000163_050 Hb_001221_570--Hb_000163_050 Hb_001096_090 Hb_001096_090 Hb_001221_570--Hb_001096_090 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_028396_010 Hb_028396_010 Hb_007894_170--Hb_028396_010 Hb_007894_170--Hb_003041_050 Hb_007894_170--Hb_000538_120 Hb_000045_310 Hb_000045_310 Hb_007894_170--Hb_000045_310 Hb_007894_170--Hb_001301_110 Hb_007894_060 Hb_007894_060 Hb_007894_170--Hb_007894_060 Hb_009787_030 Hb_009787_030 Hb_003041_050--Hb_009787_030 Hb_001427_160 Hb_001427_160 Hb_003041_050--Hb_001427_160 Hb_011344_120 Hb_011344_120 Hb_003041_050--Hb_011344_120 Hb_003041_050--Hb_001301_110 Hb_055320_010 Hb_055320_010 Hb_003041_050--Hb_055320_010 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_001369_250 Hb_001369_250 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_000555_100--Hb_003058_120 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132429 0.255464 0.567738 0.498915 0.191428 0.16775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.674439 0.641171 0.250068 0.678727 0.139269

CAGE analysis