Hb_002027_400

Information

Type -
Description -
Location Contig2027: 235707-244029
Sequence    

Annotation

kegg
ID rcu:RCOM_0556640
description transcription factor, putative
nr
ID XP_012082658.1
description PREDICTED: auxin response factor 23-like [Jatropha curcas]
swissprot
ID Q94JM3
description Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
trembl
ID A0A067JZ32
description Auxin response factor OS=Jatropha curcas GN=JCGZ_13849 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20726: 236300-237073 , PASA_asmbl_20727: 237654-238112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_400 0.0 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
2 Hb_000012_130 0.0979290726 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
3 Hb_001160_030 0.1021319732 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
4 Hb_002759_230 0.1104286709 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
5 Hb_002909_060 0.111346459 - - 3-5 exonuclease, putative [Ricinus communis]
6 Hb_001439_170 0.1220036539 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
7 Hb_028487_030 0.1234862985 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000188_130 0.1243395235 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
9 Hb_003504_020 0.1250662104 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
10 Hb_024714_060 0.1255900146 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
11 Hb_001616_030 0.1277945161 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
12 Hb_007140_020 0.1279316728 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
13 Hb_003376_030 0.128045128 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
14 Hb_002600_100 0.129889184 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
15 Hb_002540_030 0.1311374695 - - hypothetical protein 32 [Hevea brasiliensis]
16 Hb_001711_030 0.131321776 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
17 Hb_001863_480 0.1321241019 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
18 Hb_004738_010 0.132380816 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
19 Hb_007382_150 0.132438295 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_001912_010 0.1329257433 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_400 Hb_002027_400 Hb_000012_130 Hb_000012_130 Hb_002027_400--Hb_000012_130 Hb_001160_030 Hb_001160_030 Hb_002027_400--Hb_001160_030 Hb_002759_230 Hb_002759_230 Hb_002027_400--Hb_002759_230 Hb_002909_060 Hb_002909_060 Hb_002027_400--Hb_002909_060 Hb_001439_170 Hb_001439_170 Hb_002027_400--Hb_001439_170 Hb_028487_030 Hb_028487_030 Hb_002027_400--Hb_028487_030 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_000012_130--Hb_001439_170 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_000012_130--Hb_002759_230 Hb_000012_130--Hb_001160_030 Hb_003376_030 Hb_003376_030 Hb_001160_030--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001160_030--Hb_001575_020 Hb_000146_020 Hb_000146_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030 Hb_000188_130 Hb_000188_130 Hb_002759_230--Hb_000188_130 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002759_230--Hb_002909_060 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010 Hb_003581_090 Hb_003581_090 Hb_002759_230--Hb_003581_090 Hb_002540_030 Hb_002540_030 Hb_002909_060--Hb_002540_030 Hb_002053_060 Hb_002053_060 Hb_002909_060--Hb_002053_060 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_011671_390 Hb_011671_390 Hb_028487_030--Hb_011671_390 Hb_028487_030--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_028487_030--Hb_000680_140 Hb_001218_040 Hb_001218_040 Hb_028487_030--Hb_001218_040 Hb_028486_030 Hb_028486_030 Hb_028487_030--Hb_028486_030 Hb_153112_030 Hb_153112_030 Hb_028487_030--Hb_153112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30336 2.99959 2.59362 1.63294 2.72817 3.29135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5183 12.1009 11.7483 1.64254 1.84654

CAGE analysis