Hb_002027_430

Information

Type -
Description -
Location Contig2027: 264053-265466
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12960g
description POPTRDRAFT_572749; hydroxyproline-rich glycoprotein
nr
ID XP_002321036.1
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID Q94F57
description Classical arabinogalactan protein 26 OS=Arabidopsis thaliana GN=AGP26 PE=2 SV=2
trembl
ID B9I9X0
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0014s12960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20732: 264175-265469 , PASA_asmbl_20733: 264175-265469
cDNA
(Sanger)
(ID:Location)		 024_O21.ab1: 264175-265263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_430 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_001936_180 0.1039490757 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
3 Hb_116647_010 0.1056197999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000834_220 0.1126866921 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
5 Hb_001597_030 0.1198655476 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
6 Hb_001440_010 0.1205781473 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
7 Hb_003606_050 0.1244263686 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
8 Hb_005144_060 0.1296796122 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_005568_020 0.1302602748 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
10 Hb_000735_060 0.1306074485 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
11 Hb_000594_140 0.132585062 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
12 Hb_022092_110 0.1339412192 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
13 Hb_010672_050 0.1344500845 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
14 Hb_001318_100 0.1364311408 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_001104_150 0.1365332908 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_003656_090 0.1374916908 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
17 Hb_010557_020 0.1389827876 - - Mlo protein [Hevea brasiliensis]
18 Hb_000645_160 0.1398527878 - - protein translocase, putative [Ricinus communis]
19 Hb_004855_020 0.140953757 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
20 Hb_000932_060 0.1425583368 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002027_430 Hb_002027_430 Hb_001936_180 Hb_001936_180 Hb_002027_430--Hb_001936_180 Hb_116647_010 Hb_116647_010 Hb_002027_430--Hb_116647_010 Hb_000834_220 Hb_000834_220 Hb_002027_430--Hb_000834_220 Hb_001597_030 Hb_001597_030 Hb_002027_430--Hb_001597_030 Hb_001440_010 Hb_001440_010 Hb_002027_430--Hb_001440_010 Hb_003606_050 Hb_003606_050 Hb_002027_430--Hb_003606_050 Hb_022092_110 Hb_022092_110 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001440_010 Hb_001946_200 Hb_001946_200 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_001863_010 Hb_001863_010 Hb_116647_010--Hb_001863_010 Hb_000735_020 Hb_000735_020 Hb_116647_010--Hb_000735_020 Hb_064546_010 Hb_064546_010 Hb_116647_010--Hb_064546_010 Hb_001085_190 Hb_001085_190 Hb_116647_010--Hb_001085_190 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_000834_220--Hb_001936_180 Hb_000834_220--Hb_001597_030 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_003540_120 Hb_003540_120 Hb_001597_030--Hb_003540_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_001440_010--Hb_003656_090 Hb_001440_010--Hb_022092_110 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_003606_050--Hb_001936_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94792 13.3001 42.8702 59.26 0.398653 0.113404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88637 1.15081 0.665388 23.0813 31.297

CAGE analysis