Hb_002028_090

Information

Type -
Description -
Location Contig2028: 115092-117094
Sequence    

Annotation

kegg
ID cic:CICLE_v10008969mg
description hypothetical protein
nr
ID XP_012077156.1
description PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
swissprot
ID Q8RXD3
description E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1
trembl
ID A0A067KG53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07569 PE=4 SV=1
Gene Ontology
ID GO:0005829
description e3 ubiquitin-protein ligase aip2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20750: 115097-117040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
2 Hb_004984_030 0.0753759104 - - protein with unknown function [Ricinus communis]
3 Hb_040819_010 0.0878193641 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_001188_030 0.0909662218 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_044653_040 0.091658304 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
6 Hb_000926_200 0.0952165176 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
7 Hb_002968_040 0.1002493119 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
8 Hb_000025_370 0.1034491342 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
9 Hb_002060_010 0.1037368921 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
10 Hb_000832_190 0.1042055718 - - Rab3 [Hevea brasiliensis]
11 Hb_005843_140 0.1057046069 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000390_090 0.107400871 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
13 Hb_001804_080 0.1080599288 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
14 Hb_000413_240 0.1087307506 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
15 Hb_098315_020 0.1088102481 - - hypothetical protein M569_15712 [Genlisea aurea]
16 Hb_002307_180 0.1089168994 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
17 Hb_000189_570 0.1090392568 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
18 Hb_002534_100 0.1090442019 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
19 Hb_000946_090 0.1101648669 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
20 Hb_006355_040 0.110340252 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002028_090 Hb_002028_090 Hb_004984_030 Hb_004984_030 Hb_002028_090--Hb_004984_030 Hb_040819_010 Hb_040819_010 Hb_002028_090--Hb_040819_010 Hb_001188_030 Hb_001188_030 Hb_002028_090--Hb_001188_030 Hb_044653_040 Hb_044653_040 Hb_002028_090--Hb_044653_040 Hb_000926_200 Hb_000926_200 Hb_002028_090--Hb_000926_200 Hb_002968_040 Hb_002968_040 Hb_002028_090--Hb_002968_040 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_040819_010--Hb_000926_200 Hb_000035_160 Hb_000035_160 Hb_040819_010--Hb_000035_160 Hb_032202_100 Hb_032202_100 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_001718_030 Hb_001718_030 Hb_001188_030--Hb_001718_030 Hb_000676_390 Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001431_080 Hb_001431_080 Hb_001188_030--Hb_001431_080 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_015299_030 Hb_015299_030 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_000926_200--Hb_000035_160 Hb_000926_200--Hb_032202_100 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_002968_040--Hb_005843_140 Hb_002968_040--Hb_000946_090 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_002968_040--Hb_006355_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2265 19.1683 47.4212 30.4528 10.4742 9.84658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8981 54.0955 24.5206 15.8989 23.1407

CAGE analysis