Hb_002028_100

Information

Type -
Description -
Location Contig2028: 121851-122702
Sequence    

Annotation

kegg
ID cit:102624085
description uncharacterized LOC102624085
nr
ID XP_006490008.1
description PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q2HVE2
description RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC148918g30v2 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_100 0.0 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
2 Hb_002733_030 0.2060206707 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
3 Hb_002232_450 0.2064400373 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
4 Hb_015707_010 0.2275796525 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
5 Hb_097968_010 0.2538952285 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
6 Hb_000590_040 0.2622456144 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
7 Hb_025457_010 0.2716243965 - - -
8 Hb_135624_010 0.2719802516 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
9 Hb_004413_030 0.2897840764 - - Retrotransposon protein, putative [Theobroma cacao]
10 Hb_006344_010 0.291936817 - - -
11 Hb_002139_010 0.2969177176 - - -
12 Hb_186982_010 0.298417117 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]
13 Hb_001009_130 0.2999437986 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
14 Hb_085863_020 0.3014914 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
15 Hb_067188_010 0.3036632156 - - -
16 Hb_000012_300 0.3061829667 - - -
17 Hb_003747_130 0.3177154702 - - -
18 Hb_002243_040 0.3182705023 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
19 Hb_003881_050 0.3200325961 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
20 Hb_009421_010 0.3204814932 - - -

Gene co-expression network

sample Hb_002028_100 Hb_002028_100 Hb_002733_030 Hb_002733_030 Hb_002028_100--Hb_002733_030 Hb_002232_450 Hb_002232_450 Hb_002028_100--Hb_002232_450 Hb_015707_010 Hb_015707_010 Hb_002028_100--Hb_015707_010 Hb_097968_010 Hb_097968_010 Hb_002028_100--Hb_097968_010 Hb_000590_040 Hb_000590_040 Hb_002028_100--Hb_000590_040 Hb_025457_010 Hb_025457_010 Hb_002028_100--Hb_025457_010 Hb_002733_030--Hb_025457_010 Hb_002733_030--Hb_002232_450 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_001965_010 Hb_001965_010 Hb_002733_030--Hb_001965_010 Hb_002686_380 Hb_002686_380 Hb_002733_030--Hb_002686_380 Hb_000012_300 Hb_000012_300 Hb_002232_450--Hb_000012_300 Hb_002232_450--Hb_025457_010 Hb_002232_450--Hb_015707_010 Hb_002232_450--Hb_097968_010 Hb_015707_010--Hb_097968_010 Hb_015707_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_015707_010--Hb_038011_010 Hb_099864_010 Hb_099864_010 Hb_015707_010--Hb_099864_010 Hb_090497_010 Hb_090497_010 Hb_015707_010--Hb_090497_010 Hb_004103_030 Hb_004103_030 Hb_097968_010--Hb_004103_030 Hb_097968_010--Hb_025457_010 Hb_024505_050 Hb_024505_050 Hb_097968_010--Hb_024505_050 Hb_009421_010 Hb_009421_010 Hb_097968_010--Hb_009421_010 Hb_003540_130 Hb_003540_130 Hb_000590_040--Hb_003540_130 Hb_000331_150 Hb_000331_150 Hb_000590_040--Hb_000331_150 Hb_003069_020 Hb_003069_020 Hb_000590_040--Hb_003069_020 Hb_004324_350 Hb_004324_350 Hb_000590_040--Hb_004324_350 Hb_067188_010 Hb_067188_010 Hb_000590_040--Hb_067188_010 Hb_025457_010--Hb_009421_010 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122489 0 0 0 0.0821471 0.152902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.261827 0.0912846 0

CAGE analysis