Hb_002028_110

Information

Type -
Description -
Location Contig2028: 146270-147505
Sequence    

Annotation

kegg
ID rcu:RCOM_0708190
description ubiquitin-protein ligase, putative
nr
ID XP_012077154.1
description PREDICTED: F-box only protein 13 [Jatropha curcas]
swissprot
ID Q9SMZ3
description F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2
trembl
ID A0A067KCY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07568 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box only protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20756: 146885-147042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_110 0.0 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
2 Hb_000357_070 0.1006912029 - - -
3 Hb_000388_080 0.1078962889 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_001433_150 0.1097148979 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000689_050 0.1191208743 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012807_150 0.1219737059 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
7 Hb_007101_260 0.1308761146 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_034579_020 0.1309390424 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000283_140 0.1316463542 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
10 Hb_005074_040 0.1322288399 - - ATP binding protein, putative [Ricinus communis]
11 Hb_005496_020 0.1322724173 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
12 Hb_003050_360 0.1349279892 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
13 Hb_001195_660 0.1351215152 - - metalloendopeptidase, putative [Ricinus communis]
14 Hb_004994_330 0.1362815912 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000086_210 0.1365059185 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_014497_010 0.1386533579 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
17 Hb_001180_010 0.1390245934 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
18 Hb_004730_020 0.1414400709 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
19 Hb_000140_060 0.1434251641 - - 50S ribosomal protein L5, putative [Ricinus communis]
20 Hb_000527_080 0.1445782833 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]

Gene co-expression network

sample Hb_002028_110 Hb_002028_110 Hb_000357_070 Hb_000357_070 Hb_002028_110--Hb_000357_070 Hb_000388_080 Hb_000388_080 Hb_002028_110--Hb_000388_080 Hb_001433_150 Hb_001433_150 Hb_002028_110--Hb_001433_150 Hb_000689_050 Hb_000689_050 Hb_002028_110--Hb_000689_050 Hb_012807_150 Hb_012807_150 Hb_002028_110--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_002028_110--Hb_007101_260 Hb_034579_020 Hb_034579_020 Hb_000357_070--Hb_034579_020 Hb_000357_070--Hb_000388_080 Hb_000635_050 Hb_000635_050 Hb_000357_070--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_001579_300 Hb_001579_300 Hb_000388_080--Hb_001579_300 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220 Hb_003050_360 Hb_003050_360 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_004545_080 Hb_004545_080 Hb_000689_050--Hb_004545_080 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_012807_150--Hb_006120_060 Hb_000603_020 Hb_000603_020 Hb_012807_150--Hb_000603_020 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_007101_260--Hb_003050_360 Hb_007101_260--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_007101_260--Hb_000283_140 Hb_007101_260--Hb_006120_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.458414 0.952236 3.32064 3.83732 0.0482121 0.527024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548305 0.215657 0.68876 0.814095 3.0654

CAGE analysis