Hb_002028_140

Information

Type transcription factor
Description TF Family: Tify
Location Contig2028: 156292-159726
Sequence    

Annotation

kegg
ID rcu:RCOM_0708210
description hypothetical protein
nr
ID AIY25012.1
description JAZ11 [Hevea brasiliensis]
swissprot
ID Q9C5K8
description Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1
trembl
ID A0A0B4RUR9
description JAZ11 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20759: 156372-159681 , PASA_asmbl_20760: 156303-159762 , PASA_asmbl_20764: 157084-157456 , PASA_asmbl_20765: 157203-157400
cDNA
(Sanger)
(ID:Location)		 010_J18.ab1: 157390-159681 , 053_K06.ab1: 156810-159681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_140 0.0 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
2 Hb_002542_040 0.108701822 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
3 Hb_001953_070 0.1119072563 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
4 Hb_002016_150 0.1198676204 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
5 Hb_001998_120 0.1208483634 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
6 Hb_000010_110 0.1221419127 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_000367_160 0.122641169 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
8 Hb_002163_050 0.1227048421 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
9 Hb_142368_010 0.1286819276 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
10 Hb_180424_010 0.1291971234 - - Charged multivesicular body protein, putative [Ricinus communis]
11 Hb_000444_080 0.133001561 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
12 Hb_003001_080 0.1339143632 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
13 Hb_003621_020 0.134104988 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
14 Hb_002184_110 0.1347561135 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
15 Hb_006588_210 0.1349059592 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_007533_010 0.1349734711 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
17 Hb_011457_150 0.1361389761 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
18 Hb_005194_020 0.1361907616 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
19 Hb_000010_240 0.1362709956 - - Protein bem46, putative [Ricinus communis]
20 Hb_003001_110 0.1363128989 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002028_140 Hb_002028_140 Hb_002542_040 Hb_002542_040 Hb_002028_140--Hb_002542_040 Hb_001953_070 Hb_001953_070 Hb_002028_140--Hb_001953_070 Hb_002016_150 Hb_002016_150 Hb_002028_140--Hb_002016_150 Hb_001998_120 Hb_001998_120 Hb_002028_140--Hb_001998_120 Hb_000010_110 Hb_000010_110 Hb_002028_140--Hb_000010_110 Hb_000367_160 Hb_000367_160 Hb_002028_140--Hb_000367_160 Hb_002542_040--Hb_001953_070 Hb_007533_010 Hb_007533_010 Hb_002542_040--Hb_007533_010 Hb_002163_050 Hb_002163_050 Hb_002542_040--Hb_002163_050 Hb_002542_040--Hb_000010_110 Hb_001623_270 Hb_001623_270 Hb_002542_040--Hb_001623_270 Hb_012340_090 Hb_012340_090 Hb_002542_040--Hb_012340_090 Hb_001953_070--Hb_000010_110 Hb_001671_040 Hb_001671_040 Hb_001953_070--Hb_001671_040 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_007304_120 Hb_007304_120 Hb_002016_150--Hb_007304_120 Hb_000679_010 Hb_000679_010 Hb_002016_150--Hb_000679_010 Hb_000771_120 Hb_000771_120 Hb_002016_150--Hb_000771_120 Hb_000462_130 Hb_000462_130 Hb_002016_150--Hb_000462_130 Hb_000521_320 Hb_000521_320 Hb_002016_150--Hb_000521_320 Hb_003747_200 Hb_003747_200 Hb_002016_150--Hb_003747_200 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_012286_030 Hb_012286_030 Hb_000367_160--Hb_012286_030 Hb_000155_200 Hb_000155_200 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_004410_080 Hb_004410_080 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.9574 104.403 143.649 32.3609 75.8 34.268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.025 114.269 74.118 35.7995 49.3064

CAGE analysis