Hb_002028_150

Information

Type -
Description -
Location Contig2028: 165997-171497
Sequence    

Annotation

kegg
ID rcu:RCOM_0708220
description zinc finger protein, putative
nr
ID XP_012077151.1
description PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
swissprot
ID P40343
description Vacuolar protein sorting-associated protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS27 PE=1 SV=3
trembl
ID A0A067KQ91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07565 PE=4 SV=1
Gene Ontology
ID GO:0046872
description hepatocyte growth factor-regulated tyrosine kinase substrate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20766: 169106-169402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_150 0.0 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
2 Hb_034482_020 0.1033658544 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
3 Hb_000976_430 0.1083854312 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
4 Hb_000207_050 0.1088627448 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
5 Hb_130279_010 0.1119594458 - - PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 [Jatropha curcas]
6 Hb_002374_100 0.1138432935 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
7 Hb_001205_120 0.1149208454 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
8 Hb_001348_170 0.1194950139 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
9 Hb_002631_030 0.1233779952 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002044_150 0.1241414556 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
11 Hb_000815_070 0.1241586289 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
12 Hb_001511_050 0.126138302 - - PREDICTED: probable inactive serine/threonine-protein kinase bub1 isoform X1 [Jatropha curcas]
13 Hb_000621_070 0.1262653986 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_000025_030 0.1263837683 - - transcription factor, putative [Ricinus communis]
15 Hb_001726_020 0.1268713177 - - PREDICTED: endophilin-A1 [Jatropha curcas]
16 Hb_000028_180 0.1274553992 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
17 Hb_010422_010 0.1275846465 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_001981_030 0.1282307552 - - nuclear acid binding protein, putative [Ricinus communis]
19 Hb_000334_150 0.1285424225 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000468_060 0.1293869567 - - ku P70 DNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002028_150 Hb_002028_150 Hb_034482_020 Hb_034482_020 Hb_002028_150--Hb_034482_020 Hb_000976_430 Hb_000976_430 Hb_002028_150--Hb_000976_430 Hb_000207_050 Hb_000207_050 Hb_002028_150--Hb_000207_050 Hb_130279_010 Hb_130279_010 Hb_002028_150--Hb_130279_010 Hb_002374_100 Hb_002374_100 Hb_002028_150--Hb_002374_100 Hb_001205_120 Hb_001205_120 Hb_002028_150--Hb_001205_120 Hb_034482_020--Hb_000976_430 Hb_004116_140 Hb_004116_140 Hb_034482_020--Hb_004116_140 Hb_034482_020--Hb_002374_100 Hb_000621_070 Hb_000621_070 Hb_034482_020--Hb_000621_070 Hb_000815_070 Hb_000815_070 Hb_034482_020--Hb_000815_070 Hb_000504_140 Hb_000504_140 Hb_000976_430--Hb_000504_140 Hb_000976_430--Hb_002374_100 Hb_002499_040 Hb_002499_040 Hb_000976_430--Hb_002499_040 Hb_001818_090 Hb_001818_090 Hb_000976_430--Hb_001818_090 Hb_005539_280 Hb_005539_280 Hb_000976_430--Hb_005539_280 Hb_001221_210 Hb_001221_210 Hb_000976_430--Hb_001221_210 Hb_000072_320 Hb_000072_320 Hb_000207_050--Hb_000072_320 Hb_002044_150 Hb_002044_150 Hb_000207_050--Hb_002044_150 Hb_002169_050 Hb_002169_050 Hb_000207_050--Hb_002169_050 Hb_005269_070 Hb_005269_070 Hb_000207_050--Hb_005269_070 Hb_001489_080 Hb_001489_080 Hb_000207_050--Hb_001489_080 Hb_029510_050 Hb_029510_050 Hb_000207_050--Hb_029510_050 Hb_010422_010 Hb_010422_010 Hb_130279_010--Hb_010422_010 Hb_002631_030 Hb_002631_030 Hb_130279_010--Hb_002631_030 Hb_001357_300 Hb_001357_300 Hb_130279_010--Hb_001357_300 Hb_000483_260 Hb_000483_260 Hb_130279_010--Hb_000483_260 Hb_001314_070 Hb_001314_070 Hb_130279_010--Hb_001314_070 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_005183_120 Hb_005183_120 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_000441_220 Hb_000441_220 Hb_001205_120--Hb_000441_220 Hb_001205_120--Hb_002044_150 Hb_001584_140 Hb_001584_140 Hb_001205_120--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_001205_120--Hb_023344_120 Hb_000915_260 Hb_000915_260 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6199 6.10089 17.2078 7.26378 10.7896 10.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0393 9.17427 22.7556 18.4758 8.34295

CAGE analysis