Hb_002028_160

Information

Type -
Description -
Location Contig2028: 174302-174802
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23360g
description POPTRDRAFT_717610; zinc finger family protein
nr
ID XP_011019289.1
description PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
swissprot
ID Q9LY41
description E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4 PE=1 SV=1
trembl
ID A0A067KG51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07564 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_160 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
2 Hb_003376_300 0.1018339498 - - Aquaporin PIP2.2, putative [Ricinus communis]
3 Hb_000069_520 0.1104273915 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
4 Hb_011129_020 0.1312113356 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_000317_230 0.1336587558 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
6 Hb_000454_200 0.1368103523 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
7 Hb_000832_280 0.1406191061 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
8 Hb_002450_180 0.1426900022 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001856_160 0.1428908822 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010174_190 0.1430094156 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
11 Hb_007625_030 0.1446781126 - - unknown [Medicago truncatula]
12 Hb_005087_030 0.1459765642 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
13 Hb_006634_090 0.1464966076 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
14 Hb_004129_110 0.1493424071 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
15 Hb_001006_030 0.1505921607 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000022_280 0.1518496669 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
17 Hb_000479_230 0.1546626272 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
18 Hb_166009_010 0.1562955237 - - carbonyl reductase, putative [Ricinus communis]
19 Hb_008959_050 0.1577330961 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
20 Hb_005489_120 0.1582758518 - - leucine rich repeat receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002028_160 Hb_002028_160 Hb_003376_300 Hb_003376_300 Hb_002028_160--Hb_003376_300 Hb_000069_520 Hb_000069_520 Hb_002028_160--Hb_000069_520 Hb_011129_020 Hb_011129_020 Hb_002028_160--Hb_011129_020 Hb_000317_230 Hb_000317_230 Hb_002028_160--Hb_000317_230 Hb_000454_200 Hb_000454_200 Hb_002028_160--Hb_000454_200 Hb_000832_280 Hb_000832_280 Hb_002028_160--Hb_000832_280 Hb_003376_300--Hb_000454_200 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002450_180 Hb_002450_180 Hb_003376_300--Hb_002450_180 Hb_166009_010 Hb_166009_010 Hb_003376_300--Hb_166009_010 Hb_001856_160 Hb_001856_160 Hb_003376_300--Hb_001856_160 Hb_001006_030 Hb_001006_030 Hb_000069_520--Hb_001006_030 Hb_001799_090 Hb_001799_090 Hb_000069_520--Hb_001799_090 Hb_000676_170 Hb_000676_170 Hb_000069_520--Hb_000676_170 Hb_002289_110 Hb_002289_110 Hb_000069_520--Hb_002289_110 Hb_002374_060 Hb_002374_060 Hb_000069_520--Hb_002374_060 Hb_004079_100 Hb_004079_100 Hb_011129_020--Hb_004079_100 Hb_023956_010 Hb_023956_010 Hb_011129_020--Hb_023956_010 Hb_005144_080 Hb_005144_080 Hb_011129_020--Hb_005144_080 Hb_003847_050 Hb_003847_050 Hb_011129_020--Hb_003847_050 Hb_000479_230 Hb_000479_230 Hb_011129_020--Hb_000479_230 Hb_007625_030 Hb_007625_030 Hb_011129_020--Hb_007625_030 Hb_003788_010 Hb_003788_010 Hb_000317_230--Hb_003788_010 Hb_000317_220 Hb_000317_220 Hb_000317_230--Hb_000317_220 Hb_000317_230--Hb_001856_160 Hb_000022_280 Hb_000022_280 Hb_000317_230--Hb_000022_280 Hb_000317_230--Hb_003376_300 Hb_000454_200--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000454_200--Hb_000847_050 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050 Hb_000454_200--Hb_001856_160 Hb_000181_210 Hb_000181_210 Hb_000832_280--Hb_000181_210 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000056_350 Hb_000056_350 Hb_000832_280--Hb_000056_350 Hb_004324_030 Hb_004324_030 Hb_000832_280--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_000832_280--Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000832_280--Hb_026549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.2134 6.81942 14.0728 0.0537544 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.535095 0.525473 0.178115 14.4585 2.3587

CAGE analysis