Hb_002028_180

Information

Type -
Description -
Location Contig2028: 202906-204659
Sequence    

Annotation

kegg
ID rcu:RCOM_0708260
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002516181.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID B9RR12
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0708260 PE=3 SV=1
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20769: 203022-203915 , PASA_asmbl_20770: 204062-204510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_180 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_119044_010 0.0943182351 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
3 Hb_002817_040 0.1098053493 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
4 Hb_000612_090 0.1268253405 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
5 Hb_000805_010 0.136106114 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
6 Hb_003935_070 0.1388037719 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000616_030 0.1396547882 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_000108_150 0.1396606809 - - alpha/beta hydrolase, putative [Ricinus communis]
9 Hb_000441_050 0.1409428154 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
10 Hb_001195_660 0.1423904257 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_005977_060 0.1426170265 - - conserved hypothetical protein [Ricinus communis]
12 Hb_071079_020 0.1464519391 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_032631_030 0.1484958138 - - phosphatidic acid phosphatase, putative [Ricinus communis]
14 Hb_004041_050 0.1490753675 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_009079_050 0.1498854352 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
16 Hb_002542_060 0.1536151897 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
17 Hb_001124_230 0.154683115 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
18 Hb_121089_050 0.1552620767 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002235_110 0.1554931747 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_001369_100 0.1556910604 - - hypothetical protein JCGZ_26280 [Jatropha curcas]

Gene co-expression network

sample Hb_002028_180 Hb_002028_180 Hb_119044_010 Hb_119044_010 Hb_002028_180--Hb_119044_010 Hb_002817_040 Hb_002817_040 Hb_002028_180--Hb_002817_040 Hb_000612_090 Hb_000612_090 Hb_002028_180--Hb_000612_090 Hb_000805_010 Hb_000805_010 Hb_002028_180--Hb_000805_010 Hb_003935_070 Hb_003935_070 Hb_002028_180--Hb_003935_070 Hb_000616_030 Hb_000616_030 Hb_002028_180--Hb_000616_030 Hb_001227_070 Hb_001227_070 Hb_119044_010--Hb_001227_070 Hb_119044_010--Hb_002817_040 Hb_001544_050 Hb_001544_050 Hb_119044_010--Hb_001544_050 Hb_001017_130 Hb_001017_130 Hb_119044_010--Hb_001017_130 Hb_000984_150 Hb_000984_150 Hb_119044_010--Hb_000984_150 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_002817_040--Hb_000612_090 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_074197_030 Hb_074197_030 Hb_000612_090--Hb_074197_030 Hb_002235_110 Hb_002235_110 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002759_220 Hb_002759_220 Hb_000805_010--Hb_002759_220 Hb_000805_010--Hb_002817_040 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010 Hb_000649_040 Hb_000649_040 Hb_003935_070--Hb_000649_040 Hb_003935_070--Hb_000108_150 Hb_003935_070--Hb_015141_010 Hb_003935_070--Hb_000749_020 Hb_003935_070--Hb_002759_220 Hb_000300_680 Hb_000300_680 Hb_000616_030--Hb_000300_680 Hb_001124_230 Hb_001124_230 Hb_000616_030--Hb_001124_230 Hb_000616_030--Hb_000441_050 Hb_000616_030--Hb_000612_090 Hb_000616_030--Hb_005977_060 Hb_000975_050 Hb_000975_050 Hb_000616_030--Hb_000975_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.766367 0.745348 5.45179 6.85933 0.810332 0.337993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.421234 0.265129 1.70766 1.07464 10.2526

CAGE analysis