Hb_002028_210

Information

Type -
Description -
Location Contig2028: 219788-224186
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23300g
description POPTRDRAFT_417116; hypothetical protein
nr
ID XP_012077142.1
description PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07558 PE=4 SV=1
Gene Ontology
ID GO:0008253
description haloacid dehalogenase-like hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20773: 219786-224240 , PASA_asmbl_20774: 222394-222822 , PASA_asmbl_20775: 223027-224240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_210 0.0 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
2 Hb_024621_040 0.0577420585 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
3 Hb_001473_160 0.0592202304 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_093458_040 0.0598238931 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_001408_040 0.0623206025 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
6 Hb_005653_090 0.0637998039 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
7 Hb_002492_010 0.0647187426 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_028962_020 0.0651453432 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
9 Hb_001195_530 0.0657929148 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000087_060 0.0675564027 - - protein transporter, putative [Ricinus communis]
11 Hb_002849_130 0.0690504288 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
12 Hb_000679_310 0.0700337907 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
13 Hb_003464_090 0.0703444741 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
14 Hb_004096_180 0.0710007795 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
15 Hb_010381_090 0.0720955724 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_000076_160 0.0723426173 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
17 Hb_001922_150 0.0724066161 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
18 Hb_001408_140 0.0738868744 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
19 Hb_003849_110 0.0746106226 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_001959_110 0.0746691263 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002028_210 Hb_002028_210 Hb_024621_040 Hb_024621_040 Hb_002028_210--Hb_024621_040 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_001408_040 Hb_001408_040 Hb_002028_210--Hb_001408_040 Hb_005653_090 Hb_005653_090 Hb_002028_210--Hb_005653_090 Hb_002492_010 Hb_002492_010 Hb_002028_210--Hb_002492_010 Hb_007163_120 Hb_007163_120 Hb_024621_040--Hb_007163_120 Hb_003464_090 Hb_003464_090 Hb_024621_040--Hb_003464_090 Hb_007894_110 Hb_007894_110 Hb_024621_040--Hb_007894_110 Hb_000025_730 Hb_000025_730 Hb_024621_040--Hb_000025_730 Hb_001195_530 Hb_001195_530 Hb_024621_040--Hb_001195_530 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_000637_110 Hb_000637_110 Hb_001473_160--Hb_000637_110 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_001473_160--Hb_093458_040 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_005653_090--Hb_003464_090 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.071 13.1115 11.181 13.9497 9.35344 10.7221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18502 11.4048 9.93639 9.49714 7.95134

CAGE analysis