Hb_002028_250

Information

Type -
Description -
Location Contig2028: 259924-267793
Sequence    

Annotation

kegg
ID dsq:DICSQDRAFT_174897
description hypothetical protein
nr
ID EKC27858.1
description Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
swissprot
ID -
description -
trembl
ID K1Q1Q9
description Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Crassostrea gigas GN=CGI_10022642 PE=4 SV=1
Gene Ontology
ID GO:0005829
description alpha-aminoadipic semialdehyde synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20776: 224432-267830 , PASA_asmbl_20778: 261107-263647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_250 0.0 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
2 Hb_014508_020 0.0435771503 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
3 Hb_000375_210 0.0436396206 - - -
4 Hb_002757_020 0.0499417305 - - -
5 Hb_000389_120 0.053563102 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
6 Hb_002289_160 0.0541001326 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_027136_030 0.0541131708 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_149495_010 0.0541323533 - - putative starch phosphorylase, partial [Sorghum bicolor]
9 Hb_099538_020 0.054253719 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
10 Hb_010261_070 0.0544839437 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
11 Hb_005914_190 0.0550496868 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
12 Hb_001922_140 0.0559318759 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003424_040 0.056315079 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
14 Hb_157950_010 0.0566888943 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
15 Hb_073680_010 0.0567227787 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
16 Hb_003874_030 0.0568261209 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
17 Hb_005081_050 0.0573078031 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
18 Hb_049573_010 0.0585943564 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000087_110 0.0599054524 - - conserved hypothetical protein [Ricinus communis]
20 Hb_178734_010 0.0602408755 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]

Gene co-expression network

sample Hb_002028_250 Hb_002028_250 Hb_014508_020 Hb_014508_020 Hb_002028_250--Hb_014508_020 Hb_000375_210 Hb_000375_210 Hb_002028_250--Hb_000375_210 Hb_002757_020 Hb_002757_020 Hb_002028_250--Hb_002757_020 Hb_000389_120 Hb_000389_120 Hb_002028_250--Hb_000389_120 Hb_002289_160 Hb_002289_160 Hb_002028_250--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_002028_250--Hb_027136_030 Hb_014508_020--Hb_000389_120 Hb_099538_020 Hb_099538_020 Hb_014508_020--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_014508_020--Hb_010261_070 Hb_005914_190 Hb_005914_190 Hb_014508_020--Hb_005914_190 Hb_014508_020--Hb_002289_160 Hb_000375_210--Hb_002757_020 Hb_000375_210--Hb_000389_120 Hb_000431_040 Hb_000431_040 Hb_000375_210--Hb_000431_040 Hb_000375_210--Hb_014508_020 Hb_002601_030 Hb_002601_030 Hb_000375_210--Hb_002601_030 Hb_002757_020--Hb_000389_120 Hb_002757_020--Hb_014508_020 Hb_002757_020--Hb_000431_040 Hb_002757_020--Hb_005914_190 Hb_000389_120--Hb_002601_030 Hb_118730_050 Hb_118730_050 Hb_000389_120--Hb_118730_050 Hb_002783_290 Hb_002783_290 Hb_000389_120--Hb_002783_290 Hb_000194_040 Hb_000194_040 Hb_000389_120--Hb_000194_040 Hb_054865_110 Hb_054865_110 Hb_000389_120--Hb_054865_110 Hb_178734_010 Hb_178734_010 Hb_000389_120--Hb_178734_010 Hb_002289_160--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_002289_160--Hb_149495_010 Hb_002289_160--Hb_099538_020 Hb_002289_160--Hb_010261_070 Hb_002289_160--Hb_005914_190 Hb_001922_140 Hb_001922_140 Hb_002289_160--Hb_001922_140 Hb_027136_030--Hb_149495_010 Hb_027136_030--Hb_099538_020 Hb_027136_030--Hb_010261_070 Hb_027136_030--Hb_005914_190 Hb_027136_030--Hb_001922_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.33035 14.3532 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0398775 0.0522096

CAGE analysis