Hb_002028_270

Information

Type -
Description -
Location Contig2028: 279282-301103
Sequence    

Annotation

kegg
ID rcu:RCOM_0708480
description Pectinesterase-1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002516193.1
description Pectinesterase-1 precursor, putative [Ricinus communis]
swissprot
ID Q43062
description Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1
trembl
ID W9RVY7
description Pectinesterase OS=Morus notabilis GN=L484_019570 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20781: 280056-283850 , PASA_asmbl_20782: 282125-282317 , PASA_asmbl_20783: 290184-291588 , PASA_asmbl_20784: 293244-294256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_270 0.0 - - Pectinesterase-1 precursor, putative [Ricinus communis]
2 Hb_001971_040 0.0666732646 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
3 Hb_006810_040 0.0751701639 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000878_080 0.0753303082 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
5 Hb_000359_100 0.0822237863 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004005_060 0.0868004426 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
7 Hb_000289_020 0.0894422754 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
8 Hb_005211_170 0.090576244 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
9 Hb_002307_150 0.0944340846 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
10 Hb_010080_050 0.0951042765 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
11 Hb_002203_010 0.0957480154 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
12 Hb_001709_090 0.0961814044 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_000375_260 0.0972147131 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
14 Hb_000213_020 0.1006832101 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003464_010 0.1029324808 - - conserved hypothetical protein [Ricinus communis]
16 Hb_089140_070 0.1064469344 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
17 Hb_000445_260 0.1104349021 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
18 Hb_001159_090 0.1106144838 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
19 Hb_006120_130 0.1113200065 - - -
20 Hb_000933_040 0.1120409202 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_002028_270 Hb_002028_270 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_001971_040--Hb_006810_040 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_010080_050 Hb_010080_050 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_006810_040--Hb_089140_070 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_000878_080--Hb_004005_060 Hb_000359_100--Hb_002203_010 Hb_000359_100--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_000359_100--Hb_002818_060 Hb_001007_020 Hb_001007_020 Hb_000359_100--Hb_001007_020 Hb_001159_090 Hb_001159_090 Hb_000359_100--Hb_001159_090 Hb_000213_020 Hb_000213_020 Hb_004005_060--Hb_000213_020 Hb_004005_060--Hb_002203_010 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_006120_130 Hb_006120_130 Hb_000289_020--Hb_006120_130 Hb_000098_270 Hb_000098_270 Hb_000289_020--Hb_000098_270 Hb_005211_170 Hb_005211_170 Hb_000289_020--Hb_005211_170 Hb_043552_010 Hb_043552_010 Hb_000289_020--Hb_043552_010 Hb_003464_010 Hb_003464_010 Hb_000289_020--Hb_003464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0289338 1.28518 11.3114 12.627 0.0335234 0.0092817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00595049 0.00936638 0.00904263 0.953503 1.5041

CAGE analysis