Hb_002028_280

Information

Type -
Description -
Location Contig2028: 308149-310044
Sequence    

Annotation

kegg
ID rcu:RCOM_1397400
description hypothetical protein
nr
ID XP_002520413.1
description hypothetical protein RCOM_1397400 [Ricinus communis]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID B9S344
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1397400 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_280 0.0 - - hypothetical protein RCOM_1397400 [Ricinus communis]
2 Hb_004108_190 0.1619935676 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
3 Hb_000061_440 0.1655439598 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_002244_020 0.1752593873 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
5 Hb_002400_260 0.1810184416 - - catalytic, putative [Ricinus communis]
6 Hb_004117_370 0.1895200108 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
7 Hb_003654_020 0.1898373361 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_002842_010 0.1907446037 - - sulfate transporter, putative [Ricinus communis]
9 Hb_001115_070 0.1910804177 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
10 Hb_002284_160 0.1916130032 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
11 Hb_024066_040 0.1943980575 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_003209_150 0.19693631 - - CLE9, putative [Ricinus communis]
13 Hb_000107_090 0.1972990078 - - PREDICTED: kinesin KP1 [Jatropha curcas]
14 Hb_000002_500 0.1989884771 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
15 Hb_000815_090 0.199544684 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
16 Hb_000186_180 0.2010714801 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
17 Hb_008412_040 0.20152236 - - unnamed protein product [Vitis vinifera]
18 Hb_000215_230 0.2016160425 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
19 Hb_008165_050 0.2017429164 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_132840_170 0.2017879131 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]

Gene co-expression network

sample Hb_002028_280 Hb_002028_280 Hb_004108_190 Hb_004108_190 Hb_002028_280--Hb_004108_190 Hb_000061_440 Hb_000061_440 Hb_002028_280--Hb_000061_440 Hb_002244_020 Hb_002244_020 Hb_002028_280--Hb_002244_020 Hb_002400_260 Hb_002400_260 Hb_002028_280--Hb_002400_260 Hb_004117_370 Hb_004117_370 Hb_002028_280--Hb_004117_370 Hb_003654_020 Hb_003654_020 Hb_002028_280--Hb_003654_020 Hb_114271_010 Hb_114271_010 Hb_004108_190--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_004108_190--Hb_000215_230 Hb_024066_040 Hb_024066_040 Hb_004108_190--Hb_024066_040 Hb_004954_020 Hb_004954_020 Hb_004108_190--Hb_004954_020 Hb_000392_210 Hb_000392_210 Hb_004108_190--Hb_000392_210 Hb_004117_320 Hb_004117_320 Hb_000061_440--Hb_004117_320 Hb_005867_050 Hb_005867_050 Hb_000061_440--Hb_005867_050 Hb_006243_010 Hb_006243_010 Hb_000061_440--Hb_006243_010 Hb_004979_080 Hb_004979_080 Hb_000061_440--Hb_004979_080 Hb_019863_050 Hb_019863_050 Hb_000061_440--Hb_019863_050 Hb_004126_050 Hb_004126_050 Hb_000061_440--Hb_004126_050 Hb_000982_100 Hb_000982_100 Hb_002244_020--Hb_000982_100 Hb_001942_010 Hb_001942_010 Hb_002244_020--Hb_001942_010 Hb_084303_010 Hb_084303_010 Hb_002244_020--Hb_084303_010 Hb_000413_050 Hb_000413_050 Hb_002244_020--Hb_000413_050 Hb_003038_230 Hb_003038_230 Hb_002244_020--Hb_003038_230 Hb_000486_020 Hb_000486_020 Hb_002244_020--Hb_000486_020 Hb_002842_010 Hb_002842_010 Hb_002400_260--Hb_002842_010 Hb_002421_150 Hb_002421_150 Hb_002400_260--Hb_002421_150 Hb_025557_060 Hb_025557_060 Hb_002400_260--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_002400_260--Hb_000373_160 Hb_005678_020 Hb_005678_020 Hb_002400_260--Hb_005678_020 Hb_005288_100 Hb_005288_100 Hb_002400_260--Hb_005288_100 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_000107_090 Hb_000107_090 Hb_004117_370--Hb_000107_090 Hb_004531_170 Hb_004531_170 Hb_004117_370--Hb_004531_170 Hb_004117_370--Hb_000982_100 Hb_000127_100 Hb_000127_100 Hb_004117_370--Hb_000127_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100 Hb_000186_180 Hb_000186_180 Hb_003654_020--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_003654_020--Hb_003209_150 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_000031_320 Hb_000031_320 Hb_003654_020--Hb_000031_320 Hb_002307_120 Hb_002307_120 Hb_003654_020--Hb_002307_120 Hb_002818_160 Hb_002818_160 Hb_003654_020--Hb_002818_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0531037 0.145626 0.209083 0.17245 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.368139

CAGE analysis