Hb_002030_050

Information

Type -
Description -
Location Contig2030: 90100-90597
Sequence    

Annotation

kegg
ID dpp:DICPUDRAFT_78981
description hypothetical protein
nr
ID NP_001295717.1
description classical arabinogalactan protein 7 precursor [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E1U348
description Early nodulin 20 OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20825: 89921-90898
cDNA
(Sanger)
(ID:Location)		 001_M16.ab1: 90042-90770 , 008_B16.ab1: 90042-90737 , 012_O14.ab1: 90042-90726

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_050 0.0 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
2 Hb_004242_120 0.12731489 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_000574_320 0.1413857795 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
4 Hb_011472_050 0.153099754 - - -
5 Hb_000237_170 0.1536606831 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
6 Hb_003687_160 0.1550472161 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_002013_030 0.1582858238 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
8 Hb_000352_060 0.1603131878 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_000574_330 0.1633736543 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_006940_020 0.1643692475 - - polyprotein [Oryza australiensis]
11 Hb_041813_090 0.1662106386 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
12 Hb_004109_130 0.1670045986 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
13 Hb_022693_080 0.1678702158 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_116784_020 0.1702974519 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
15 Hb_004117_320 0.1709721247 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
16 Hb_067472_010 0.1735439206 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
17 Hb_011649_030 0.1737656573 - - hypothetical protein [Vitis hybrid cultivar]
18 Hb_005867_050 0.173801793 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
19 Hb_010174_100 0.1749106902 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
20 Hb_000173_110 0.1770363972 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]

Gene co-expression network

sample Hb_002030_050 Hb_002030_050 Hb_004242_120 Hb_004242_120 Hb_002030_050--Hb_004242_120 Hb_000574_320 Hb_000574_320 Hb_002030_050--Hb_000574_320 Hb_011472_050 Hb_011472_050 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_003687_160 Hb_003687_160 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030 Hb_000173_110 Hb_000173_110 Hb_004242_120--Hb_000173_110 Hb_004242_120--Hb_011472_050 Hb_004242_120--Hb_003687_160 Hb_004242_120--Hb_000574_320 Hb_022693_080 Hb_022693_080 Hb_004242_120--Hb_022693_080 Hb_140389_010 Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_000069_500 Hb_000069_500 Hb_000574_320--Hb_000069_500 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_001468_040 Hb_001468_040 Hb_000237_170--Hb_001468_040 Hb_000753_150 Hb_000753_150 Hb_000237_170--Hb_000753_150 Hb_000103_230 Hb_000103_230 Hb_000237_170--Hb_000103_230 Hb_000237_160 Hb_000237_160 Hb_000237_170--Hb_000237_160 Hb_000237_170--Hb_022693_080 Hb_000237_170--Hb_011472_050 Hb_000123_340 Hb_000123_340 Hb_003687_160--Hb_000123_340 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_011649_030 Hb_011649_030 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_002013_030--Hb_067472_010 Hb_116784_020 Hb_116784_020 Hb_002013_030--Hb_116784_020 Hb_002013_030--Hb_001366_260 Hb_007543_020 Hb_007543_020 Hb_002013_030--Hb_007543_020 Hb_002013_030--Hb_011649_030 Hb_000820_100 Hb_000820_100 Hb_002013_030--Hb_000820_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7895 204.05 111.742 95.946 44.4676 26.4642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64771 1.27363 2.33554 36.5911 682.737

CAGE analysis