Hb_002030_130

Information

Type -
Description -
Location Contig2030: 156410-156820
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20828: 156344-157209
cDNA
(Sanger)
(ID:Location)		 007_H17.ab1: 156344-157045 , 015_F22.ab1: 156344-157020 , 028_D13.ab1: 156344-157037 , 038_C06.ab1: 156344-157045

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_130 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_003228_050 0.1044218538 - - chromomethylase [Hevea brasiliensis]
3 Hb_001524_120 0.1100861545 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
4 Hb_005183_150 0.1248468154 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
5 Hb_124677_050 0.1271701707 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007632_210 0.1357224243 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
7 Hb_001999_160 0.1367935158 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
8 Hb_003360_010 0.1368086156 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
9 Hb_000431_100 0.1379291549 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
10 Hb_002284_260 0.138326656 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
11 Hb_004531_080 0.1394293194 - - hypothetical protein RCOM_1491960 [Ricinus communis]
12 Hb_005542_150 0.1401578753 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
13 Hb_001863_010 0.1438812356 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
14 Hb_003813_090 0.1470820242 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
15 Hb_020301_020 0.1479788871 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_000500_340 0.1482495107 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_002276_250 0.1488447771 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_001348_100 0.1498228425 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
19 Hb_006693_010 0.1509718013 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
20 Hb_001322_160 0.1534118619 - - hypothetical protein JCGZ_03472 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_130 Hb_002030_130 Hb_003228_050 Hb_003228_050 Hb_002030_130--Hb_003228_050 Hb_001524_120 Hb_001524_120 Hb_002030_130--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_002030_130--Hb_005183_150 Hb_124677_050 Hb_124677_050 Hb_002030_130--Hb_124677_050 Hb_007632_210 Hb_007632_210 Hb_002030_130--Hb_007632_210 Hb_001999_160 Hb_001999_160 Hb_002030_130--Hb_001999_160 Hb_003228_050--Hb_001524_120 Hb_003228_050--Hb_007632_210 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_000431_100 Hb_000431_100 Hb_001524_120--Hb_000431_100 Hb_003360_010 Hb_003360_010 Hb_001524_120--Hb_003360_010 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_001524_120--Hb_005183_150 Hb_024682_030 Hb_024682_030 Hb_001524_120--Hb_024682_030 Hb_005183_150--Hb_007632_210 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_005183_150--Hb_003360_010 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_005183_150--Hb_124677_050 Hb_124677_050--Hb_003360_010 Hb_124677_050--Hb_007632_210 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_007632_210--Hb_002311_090 Hb_007632_210--Hb_101133_050 Hb_005542_150 Hb_005542_150 Hb_001999_160--Hb_005542_150 Hb_002081_060 Hb_002081_060 Hb_001999_160--Hb_002081_060 Hb_000954_040 Hb_000954_040 Hb_001999_160--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_001999_160--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001999_160--Hb_002700_030 Hb_001999_160--Hb_003228_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423908 0.843186 71.5467 61.4843 0.30711 1.30736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7034 3.71651 0.959588 18.5067 13.1817

CAGE analysis