Hb_002030_140

Information

Type -
Description -
Location Contig2030: 156912-159119
Sequence    

Annotation

kegg
ID tcc:TCM_001028
description hypothetical protein
nr
ID XP_012081727.1
description PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID A0A067K0L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18671 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein mizu-kussei 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20828: 156344-157209
cDNA
(Sanger)
(ID:Location)		 007_H17.ab1: 156344-157045 , 015_F22.ab1: 156344-157020 , 028_D13.ab1: 156344-157037 , 038_C06.ab1: 156344-157045

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_140 0.0 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
2 Hb_022929_010 0.0014489409 - - zinc/iron transporter, putative [Ricinus communis]
3 Hb_000680_080 0.0019411208 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
4 Hb_012573_060 0.0058681487 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
5 Hb_001546_100 0.0060705201 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
6 Hb_014109_030 0.0345675015 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
7 Hb_000844_120 0.037270479 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
8 Hb_003994_210 0.037852312 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000077_430 0.0390072581 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
10 Hb_004447_040 0.0393345471 - - cyclin d, putative [Ricinus communis]
11 Hb_004019_130 0.0399758934 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
12 Hb_000212_170 0.0450724485 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
13 Hb_000129_060 0.0456800982 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
14 Hb_000500_380 0.0497840272 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
15 Hb_004744_030 0.050450878 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_046150_010 0.0533074261 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
17 Hb_002186_150 0.0533407687 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_021622_010 0.054323724 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_011846_020 0.0551378155 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
20 Hb_162008_040 0.0575586566 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]

Gene co-expression network

sample Hb_002030_140 Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_002030_140--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_002030_140--Hb_000680_080 Hb_012573_060 Hb_012573_060 Hb_002030_140--Hb_012573_060 Hb_001546_100 Hb_001546_100 Hb_002030_140--Hb_001546_100 Hb_014109_030 Hb_014109_030 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120 Hb_022929_010--Hb_000680_080 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_000680_080--Hb_012573_060 Hb_000680_080--Hb_001546_100 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_012573_060--Hb_001546_100 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_014109_030--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_014109_030--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_014109_030--Hb_004447_040 Hb_000500_380 Hb_000500_380 Hb_014109_030--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.05237 0.0704007 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis