Hb_002030_180

Information

Type -
Description -
Location Contig2030: 221861-223339
Sequence    

Annotation

kegg
ID rcu:RCOM_0337900
description ring finger protein, putative
nr
ID XP_002534099.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q8LFY8
description RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2
trembl
ID B9T780
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0337900 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl54-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20834: 221520-222645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_180 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_043987_010 0.115306364 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_005814_010 0.1193882053 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000495_050 0.1272800482 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
5 Hb_000031_160 0.1338571343 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
6 Hb_002477_100 0.1386033304 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
7 Hb_000009_150 0.1392239224 - - carbohydrate transporter, putative [Ricinus communis]
8 Hb_005649_010 0.1400902482 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
9 Hb_000152_170 0.1469454441 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
10 Hb_005080_020 0.1510003412 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_006615_160 0.151157865 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
12 Hb_001141_210 0.1514541348 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
13 Hb_001619_020 0.152028461 - - LRR receptor-like kinase family protein [Medicago truncatula]
14 Hb_013938_010 0.1543556891 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
15 Hb_001318_110 0.1555946395 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
16 Hb_048476_040 0.1568606842 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
17 Hb_001377_130 0.1583714112 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
18 Hb_005628_050 0.1599199574 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
19 Hb_005375_070 0.1615628943 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
20 Hb_005542_030 0.1627855909 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_180 Hb_002030_180 Hb_043987_010 Hb_043987_010 Hb_002030_180--Hb_043987_010 Hb_005814_010 Hb_005814_010 Hb_002030_180--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_002030_180--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_002030_180--Hb_000031_160 Hb_002477_100 Hb_002477_100 Hb_002030_180--Hb_002477_100 Hb_000009_150 Hb_000009_150 Hb_002030_180--Hb_000009_150 Hb_043987_010--Hb_002477_100 Hb_001377_130 Hb_001377_130 Hb_043987_010--Hb_001377_130 Hb_005542_030 Hb_005542_030 Hb_043987_010--Hb_005542_030 Hb_005628_050 Hb_005628_050 Hb_043987_010--Hb_005628_050 Hb_005649_010 Hb_005649_010 Hb_043987_010--Hb_005649_010 Hb_005814_010--Hb_000495_050 Hb_000771_070 Hb_000771_070 Hb_005814_010--Hb_000771_070 Hb_005814_010--Hb_000031_160 Hb_000402_030 Hb_000402_030 Hb_005814_010--Hb_000402_030 Hb_052434_010 Hb_052434_010 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_002107_110 Hb_002107_110 Hb_000495_050--Hb_002107_110 Hb_000454_080 Hb_000454_080 Hb_000495_050--Hb_000454_080 Hb_005867_030 Hb_005867_030 Hb_000495_050--Hb_005867_030 Hb_000985_140 Hb_000985_140 Hb_000495_050--Hb_000985_140 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_000031_160--Hb_005628_050 Hb_001141_210 Hb_001141_210 Hb_000031_160--Hb_001141_210 Hb_004785_160 Hb_004785_160 Hb_000031_160--Hb_004785_160 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_023278_030 Hb_023278_030 Hb_002477_100--Hb_023278_030 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_000020_070 Hb_000020_070 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.371649 29.9907 30.0866 16.5971 0 0.316506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26962 0.923927 2.90717 13.6481 5.63863

CAGE analysis