Hb_002035_030

Information

Type -
Description -
Location Contig2035: 64278-67789
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003221mg
description hypothetical protein
nr
ID XP_007213800.1
description hypothetical protein PRUPE_ppa003221mg [Prunus persica]
swissprot
ID Q8L746
description Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1
trembl
ID M5WMT1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003221mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20846: 64976-65720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_030 0.0 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
2 Hb_001377_500 0.1360899223 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
3 Hb_001195_500 0.1544289846 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
4 Hb_000840_070 0.1624775175 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_004631_110 0.1708215484 - - ring finger protein, putative [Ricinus communis]
6 Hb_017857_010 0.1786424277 - - -
7 Hb_000853_100 0.1806907026 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
8 Hb_000608_020 0.1823024813 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
9 Hb_158696_010 0.1848812114 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
10 Hb_011689_100 0.190541762 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
11 Hb_001608_030 0.1913513422 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
12 Hb_082870_010 0.191368472 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_008380_010 0.1923922525 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
14 Hb_003449_030 0.1959231041 - - PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Camelina sativa]
15 Hb_000007_160 0.1990541724 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
16 Hb_115158_010 0.2005026188 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_001355_070 0.2028083805 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
18 Hb_032050_070 0.2032648163 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
19 Hb_000567_350 0.2035894104 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
20 Hb_068332_010 0.2038151634 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_002035_030 Hb_002035_030 Hb_001377_500 Hb_001377_500 Hb_002035_030--Hb_001377_500 Hb_001195_500 Hb_001195_500 Hb_002035_030--Hb_001195_500 Hb_000840_070 Hb_000840_070 Hb_002035_030--Hb_000840_070 Hb_004631_110 Hb_004631_110 Hb_002035_030--Hb_004631_110 Hb_017857_010 Hb_017857_010 Hb_002035_030--Hb_017857_010 Hb_000853_100 Hb_000853_100 Hb_002035_030--Hb_000853_100 Hb_001377_500--Hb_001195_500 Hb_000000_140 Hb_000000_140 Hb_001377_500--Hb_000000_140 Hb_000608_020 Hb_000608_020 Hb_001377_500--Hb_000608_020 Hb_002609_150 Hb_002609_150 Hb_001377_500--Hb_002609_150 Hb_002272_140 Hb_002272_140 Hb_001377_500--Hb_002272_140 Hb_000007_160 Hb_000007_160 Hb_001195_500--Hb_000007_160 Hb_001355_070 Hb_001355_070 Hb_001195_500--Hb_001355_070 Hb_001791_010 Hb_001791_010 Hb_001195_500--Hb_001791_010 Hb_001148_040 Hb_001148_040 Hb_001195_500--Hb_001148_040 Hb_001195_500--Hb_004631_110 Hb_000840_070--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_000840_070--Hb_001195_350 Hb_002471_140 Hb_002471_140 Hb_000840_070--Hb_002471_140 Hb_001856_170 Hb_001856_170 Hb_000840_070--Hb_001856_170 Hb_000465_260 Hb_000465_260 Hb_000840_070--Hb_000465_260 Hb_000009_140 Hb_000009_140 Hb_000840_070--Hb_000009_140 Hb_004631_110--Hb_001195_350 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_006615_160 Hb_006615_160 Hb_017857_010--Hb_006615_160 Hb_000776_050 Hb_000776_050 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_000172_050 Hb_000172_050 Hb_000853_100--Hb_000172_050 Hb_000853_100--Hb_017857_010 Hb_000853_100--Hb_000776_050 Hb_000853_100--Hb_006615_160 Hb_000345_500 Hb_000345_500 Hb_000853_100--Hb_000345_500 Hb_008380_010 Hb_008380_010 Hb_000853_100--Hb_008380_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31041 9.17271 2.3523 4.18814 0.437778 0.263441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.096997 0.0508849 0.995928 3.37762 0.379241

CAGE analysis