Hb_002035_120

Information

Type -
Description -
Location Contig2035: 145277-147217
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02260g
description hypothetical protein
nr
ID XP_012075129.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
swissprot
ID Q9LUL5
description Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
trembl
ID A0A067KU51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10368 PE=4 SV=1
Gene Ontology
ID GO:0016556
description pentatricopeptide repeat-containing protein at3g14330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
2 Hb_000676_010 0.056869039 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
3 Hb_000201_100 0.0800648987 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
4 Hb_001247_250 0.0811233552 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
5 Hb_027295_050 0.0856860956 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
6 Hb_002725_120 0.0939349333 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
7 Hb_004374_070 0.0965696192 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_002110_150 0.101554374 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_000172_430 0.1042245921 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002234_170 0.1045671706 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
11 Hb_000574_400 0.105025737 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
12 Hb_011316_050 0.106553849 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
13 Hb_001818_070 0.1081902274 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_004208_030 0.108412145 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
15 Hb_000165_250 0.1088227894 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
16 Hb_000352_270 0.1092127053 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
17 Hb_000291_050 0.1096802825 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
18 Hb_000230_500 0.1111870528 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
19 Hb_002783_040 0.1114972698 transcription factor TF Family: IWS1 -
20 Hb_000453_050 0.1137643903 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002035_120 Hb_002035_120 Hb_000676_010 Hb_000676_010 Hb_002035_120--Hb_000676_010 Hb_000201_100 Hb_000201_100 Hb_002035_120--Hb_000201_100 Hb_001247_250 Hb_001247_250 Hb_002035_120--Hb_001247_250 Hb_027295_050 Hb_027295_050 Hb_002035_120--Hb_027295_050 Hb_002725_120 Hb_002725_120 Hb_002035_120--Hb_002725_120 Hb_004374_070 Hb_004374_070 Hb_002035_120--Hb_004374_070 Hb_002110_150 Hb_002110_150 Hb_000676_010--Hb_002110_150 Hb_000676_010--Hb_001247_250 Hb_000140_230 Hb_000140_230 Hb_000676_010--Hb_000140_230 Hb_050622_050 Hb_050622_050 Hb_000676_010--Hb_050622_050 Hb_001818_070 Hb_001818_070 Hb_000676_010--Hb_001818_070 Hb_000201_100--Hb_027295_050 Hb_000201_100--Hb_001247_250 Hb_000172_430 Hb_000172_430 Hb_000201_100--Hb_000172_430 Hb_000165_250 Hb_000165_250 Hb_000201_100--Hb_000165_250 Hb_000029_050 Hb_000029_050 Hb_000201_100--Hb_000029_050 Hb_000289_060 Hb_000289_060 Hb_000201_100--Hb_000289_060 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_001247_250--Hb_000172_430 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_027295_050--Hb_000165_250 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_002725_120--Hb_000165_250 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_000041_100 Hb_000041_100 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_007483_100 Hb_007483_100 Hb_004374_070--Hb_007483_100 Hb_004374_070--Hb_002725_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76039 2.57797 1.81277 0.902669 1.99262 2.377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28325 2.38654 3.4784 0.905912 2.17069

CAGE analysis