Hb_002035_130

Information

Type -
Description -
Location Contig2035: 149079-160766
Sequence    

Annotation

kegg
ID rcu:RCOM_1643620
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID AKG55562.1
description plasma membrane H+-ATPase [Hevea brasiliensis]
swissprot
ID Q03194
description Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1
trembl
ID A0A067KK61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10367 PE=3 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane atpase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20853: 148796-155761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_130 0.0 - - plasma membrane H+-ATPase [Hevea brasiliensis]
2 Hb_000403_100 0.0975858098 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
3 Hb_005396_030 0.1225103199 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002598_040 0.1307653126 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
5 Hb_005643_080 0.1318349893 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
6 Hb_017700_030 0.1348246093 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
7 Hb_001080_120 0.1595605958 - - Spotted leaf protein, putative [Ricinus communis]
8 Hb_008566_070 0.1599861139 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001999_200 0.1611500891 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
10 Hb_006951_010 0.1627088807 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
11 Hb_002783_210 0.1660479422 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
12 Hb_020301_010 0.1675133108 - - cytochrome P450, putative [Ricinus communis]
13 Hb_080601_010 0.1698570357 - - metallothionein 3-like protein [Hevea brasiliensis]
14 Hb_111985_090 0.1720466291 - - hypothetical protein RCOM_1595950 [Ricinus communis]
15 Hb_000227_350 0.1724477169 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
16 Hb_000201_050 0.1730255377 - - -
17 Hb_000666_120 0.1734222564 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_000983_110 0.1741290274 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
19 Hb_091140_020 0.1757895396 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
20 Hb_000567_220 0.1760805034 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]

Gene co-expression network

sample Hb_002035_130 Hb_002035_130 Hb_000403_100 Hb_000403_100 Hb_002035_130--Hb_000403_100 Hb_005396_030 Hb_005396_030 Hb_002035_130--Hb_005396_030 Hb_002598_040 Hb_002598_040 Hb_002035_130--Hb_002598_040 Hb_005643_080 Hb_005643_080 Hb_002035_130--Hb_005643_080 Hb_017700_030 Hb_017700_030 Hb_002035_130--Hb_017700_030 Hb_001080_120 Hb_001080_120 Hb_002035_130--Hb_001080_120 Hb_000403_100--Hb_002598_040 Hb_000403_100--Hb_017700_030 Hb_000403_100--Hb_005396_030 Hb_001999_200 Hb_001999_200 Hb_000403_100--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_005396_030--Hb_017700_030 Hb_111985_090 Hb_111985_090 Hb_005396_030--Hb_111985_090 Hb_005396_030--Hb_005643_080 Hb_020301_010 Hb_020301_010 Hb_005396_030--Hb_020301_010 Hb_002598_040--Hb_017700_030 Hb_068804_180 Hb_068804_180 Hb_002598_040--Hb_068804_180 Hb_002598_040--Hb_001999_200 Hb_002598_040--Hb_114733_010 Hb_000816_150 Hb_000816_150 Hb_002598_040--Hb_000816_150 Hb_008566_070 Hb_008566_070 Hb_005643_080--Hb_008566_070 Hb_006951_010 Hb_006951_010 Hb_005643_080--Hb_006951_010 Hb_005643_080--Hb_111985_090 Hb_000604_050 Hb_000604_050 Hb_005643_080--Hb_000604_050 Hb_000201_070 Hb_000201_070 Hb_005643_080--Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_005643_080--Hb_010267_030 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_080601_010 Hb_080601_010 Hb_001080_120--Hb_080601_010 Hb_103225_030 Hb_103225_030 Hb_001080_120--Hb_103225_030 Hb_000030_230 Hb_000030_230 Hb_001080_120--Hb_000030_230 Hb_001080_120--Hb_000403_100 Hb_003023_030 Hb_003023_030 Hb_001080_120--Hb_003023_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46047 17.031 4.3411 35.4994 0.0621047 2.13472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0115221 0 0.534715 6.31697

CAGE analysis