Hb_002039_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig2039: 39098-43707
Sequence    

Annotation

kegg
ID rcu:RCOM_1613520
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID GO:0016905
description zinc finger ccch domain-containing protein 48-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20881: 39164-39345 , PASA_asmbl_20882: 39498-42658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002039_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_002890_340 0.0628864191 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
3 Hb_004204_020 0.0683449078 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
4 Hb_004452_100 0.0709240817 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
5 Hb_000152_820 0.0736267415 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
6 Hb_000184_130 0.0736365913 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
7 Hb_015306_020 0.0772510941 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
8 Hb_000776_110 0.0787460598 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
9 Hb_001017_040 0.0792064684 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
10 Hb_000661_050 0.080413036 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
11 Hb_000244_250 0.0810153638 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_004055_040 0.0811243597 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
13 Hb_000421_260 0.0816588537 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
14 Hb_003581_140 0.0840487267 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
15 Hb_002307_100 0.0841528057 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
16 Hb_005730_030 0.0845161037 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_010710_010 0.0855496612 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
18 Hb_000803_190 0.0856692329 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_000062_240 0.0861515071 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
20 Hb_000915_050 0.086691908 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002039_010 Hb_002039_010 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_002890_340--Hb_015306_020 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_004204_020--Hb_000184_130 Hb_003362_040 Hb_003362_040 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_002798_040 Hb_002798_040 Hb_004452_100--Hb_002798_040 Hb_001366_040 Hb_001366_040 Hb_004452_100--Hb_001366_040 Hb_011318_010 Hb_011318_010 Hb_004452_100--Hb_011318_010 Hb_000244_250 Hb_000244_250 Hb_004452_100--Hb_000244_250 Hb_000184_110 Hb_000184_110 Hb_004452_100--Hb_000184_110 Hb_010175_020 Hb_010175_020 Hb_000152_820--Hb_010175_020 Hb_000317_020 Hb_000317_020 Hb_000152_820--Hb_000317_020 Hb_007757_110 Hb_007757_110 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_000184_130--Hb_003362_040 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050 Hb_015306_020--Hb_004046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2017 9.39488 3.20504 4.39341 19.8257 26.9732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8138 11.8971 19.5641 12.5078 6.40769

CAGE analysis