Hb_002042_020

Information

Type -
Description -
Location Contig2042: 30232-32157
Sequence    

Annotation

kegg
ID cic:CICLE_v10001869mg
description hypothetical protein
nr
ID XP_006433314.1
description hypothetical protein CICLE_v10001869mg [Citrus clementina]
swissprot
ID Q9MA90
description Peroxisomal adenine nucleotide carrier 1 OS=Arabidopsis thaliana GN=PNC1 PE=1 SV=1
trembl
ID A0A067EYM0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021007mg PE=3 SV=1
Gene Ontology
ID GO:0005743
description peroxisomal adenine nucleotide carrier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_020 0.0 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
2 Hb_000094_210 0.1073090465 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
3 Hb_007416_090 0.113950183 - - UDP-sugar transporter, putative [Ricinus communis]
4 Hb_003994_120 0.1141876385 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
5 Hb_000483_220 0.1146336977 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
6 Hb_003633_050 0.117139274 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_002804_040 0.1179434676 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
8 Hb_000787_020 0.1192799138 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003571_030 0.1212225214 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
10 Hb_084646_010 0.1215610809 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
11 Hb_001085_240 0.1216959888 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
12 Hb_000096_160 0.1219170938 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
13 Hb_005305_110 0.1223976031 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
14 Hb_000228_110 0.1229268707 - - unnamed protein product [Vitis vinifera]
15 Hb_001104_230 0.1233869378 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
16 Hb_001016_120 0.1256873162 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_004109_310 0.1270769965 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
18 Hb_001157_110 0.1272989231 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
19 Hb_006913_010 0.129957707 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
20 Hb_000095_080 0.1301566157 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_020 Hb_002042_020 Hb_000094_210 Hb_000094_210 Hb_002042_020--Hb_000094_210 Hb_007416_090 Hb_007416_090 Hb_002042_020--Hb_007416_090 Hb_003994_120 Hb_003994_120 Hb_002042_020--Hb_003994_120 Hb_000483_220 Hb_000483_220 Hb_002042_020--Hb_000483_220 Hb_003633_050 Hb_003633_050 Hb_002042_020--Hb_003633_050 Hb_002804_040 Hb_002804_040 Hb_002042_020--Hb_002804_040 Hb_000069_210 Hb_000069_210 Hb_000094_210--Hb_000069_210 Hb_002631_010 Hb_002631_010 Hb_000094_210--Hb_002631_010 Hb_000094_210--Hb_007416_090 Hb_001085_240 Hb_001085_240 Hb_000094_210--Hb_001085_240 Hb_000094_210--Hb_003633_050 Hb_000025_190 Hb_000025_190 Hb_000094_210--Hb_000025_190 Hb_007416_090--Hb_000069_210 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_001789_150 Hb_001789_150 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080 Hb_006637_070 Hb_006637_070 Hb_003994_120--Hb_006637_070 Hb_004586_420 Hb_004586_420 Hb_003994_120--Hb_004586_420 Hb_023001_040 Hb_023001_040 Hb_003994_120--Hb_023001_040 Hb_005914_170 Hb_005914_170 Hb_003994_120--Hb_005914_170 Hb_003058_120 Hb_003058_120 Hb_003994_120--Hb_003058_120 Hb_006452_100 Hb_006452_100 Hb_003994_120--Hb_006452_100 Hb_050454_010 Hb_050454_010 Hb_000483_220--Hb_050454_010 Hb_000665_060 Hb_000665_060 Hb_000483_220--Hb_000665_060 Hb_000483_220--Hb_007416_090 Hb_004607_050 Hb_004607_050 Hb_000483_220--Hb_004607_050 Hb_000260_010 Hb_000260_010 Hb_000483_220--Hb_000260_010 Hb_001163_100 Hb_001163_100 Hb_000483_220--Hb_001163_100 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_003633_050--Hb_001085_240 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000297_120 Hb_000297_120 Hb_002804_040--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_002804_040--Hb_004046_030 Hb_002804_040--Hb_000025_190 Hb_001842_010 Hb_001842_010 Hb_002804_040--Hb_001842_010 Hb_000946_110 Hb_000946_110 Hb_002804_040--Hb_000946_110 Hb_003206_110 Hb_003206_110 Hb_002804_040--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.79332 4.58774 3.37207 13.9395 5.44322 3.77578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38796 8.42496 10.4216 15.5746 7.61116

CAGE analysis